Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5228

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5227: 13595 - K00601 E2.1.2.2 phosphoribosylglycinamide formyltransferase, at 201689 to 202738 13595 mRNA_5228: 13596 - HMMPfam-Mis6-PF07778, at 203109 to 206278 13596 mRNA_5229: 13597 - SUPERFAMILY--SSF51445, at 206396 to 208003 13597

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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202,754 + 0.1
203,081 + -2.1
203,087 + -0.5
203,163 - 0.6
203,200 + 2.3
203,215 - 0.4
203,309 + 0.7
203,492 - 13596 mRNA_5228 0.12 0.1
203,678 - 13596 mRNA_5228 0.18 2.8
203,791 + 13596 mRNA_5228 0.22 1.0
203,959 - 13596 mRNA_5228 0.27 0.7
203,987 + 13596 mRNA_5228 0.28 0.0
204,266 + 13596 mRNA_5228 0.36 -0.5
204,823 - 13596 mRNA_5228 0.54 1.7
205,075 - 13596 mRNA_5228 0.62 0.7
205,120 + 13596 mRNA_5228 0.63 -0.3
205,261 - 13596 mRNA_5228 0.68 0.8
205,292 + 13596 mRNA_5228 0.69 0.3
205,429 + 13596 mRNA_5228 0.73 0.8
205,432 - 13596 mRNA_5228 0.73 -0.3
205,515 - 13596 mRNA_5228 0.76 0.1
205,523 + 13596 mRNA_5228 0.76 2.5
205,531 + 13596 mRNA_5228 0.76 -2.5
205,782 - 13596 mRNA_5228 0.84 0.7
205,828 - 13596 mRNA_5228 0.86 -0.2
205,876 + 13596 mRNA_5228 0.87 1.0
206,078 - -0.7
206,100 + 0.7
206,135 - 1.5
206,140 + 0.7
206,250 - 3.0
206,252 - 0.6
206,414 - -0.3
206,416 - 2.9
206,716 - 13597 mRNA_5229 0.20 -0.2
206,752 + 13597 mRNA_5229 0.22 -2.4
206,755 + 13597 mRNA_5229 0.22 0.4
206,833 - 13597 mRNA_5229 0.27 2.8
206,863 - 13597 mRNA_5229 0.29 -0.8
206,895 + 13597 mRNA_5229 0.31 -0.1
206,983 - 13597 mRNA_5229 0.37 -0.4
207,125 + 13597 mRNA_5229 0.45 -0.1
207,167 - 13597 mRNA_5229 0.48 0.2
207,204 + 13597 mRNA_5229 0.50 -1.4