Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5226

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5225: 13593 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 192628 to 196368 13593 mRNA_5226: 13594 - K12472 EPS15 epidermal growth factor receptor substrate 15, at 196713 to 201520 13594 mRNA_5227: 13595 - K00601 E2.1.2.2 phosphoribosylglycinamide formyltransferase, at 201689 to 202738 13595

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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195,841 + 13593 mRNA_5225 0.86 0.6
195,844 - 13593 mRNA_5225 0.86 0.3
195,871 + 13593 mRNA_5225 0.87 0.3
195,939 + 13593 mRNA_5225 0.89 1.2
196,229 - -0.1
196,229 - -0.4
196,568 - 1.5
196,726 - 0.2
196,737 + -0.4
196,746 + -0.8
196,860 + -0.8
196,993 - 1.9
197,000 + -1.0
197,011 - 1.1
197,013 - -0.3
197,143 - 1.5
197,281 + 13594 mRNA_5226 0.12 1.2
197,732 - 13594 mRNA_5226 0.21 1.9
197,928 + 13594 mRNA_5226 0.25 2.1
198,074 - 13594 mRNA_5226 0.28 0.9
198,149 - 13594 mRNA_5226 0.30 -1.3
198,198 - 13594 mRNA_5226 0.31 0.9
198,324 - 13594 mRNA_5226 0.34 1.7
198,390 + 13594 mRNA_5226 0.35 2.2
198,459 + 13594 mRNA_5226 0.36 0.7
198,520 - 13594 mRNA_5226 0.38 0.0
198,591 + 13594 mRNA_5226 0.39 -2.6
200,000 + 13594 mRNA_5226 0.68 0.0
200,682 + 13594 mRNA_5226 0.83 2.2
201,036 + 13594 mRNA_5226 0.90 -0.1
201,117 + 0.4
201,156 - -0.1
201,311 + 2.9
201,315 - -1.0
201,327 + 0.8
201,430 - -0.9
201,455 + 0.2
201,468 - 1.7
201,594 - -0.1
201,617 + 0.2
201,636 + 0.4
201,912 - 13595 mRNA_5227 0.21 -0.0