Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5225

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5224: 13592 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 190897 to 192363 13592 mRNA_5225: 13593 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 192628 to 196368 13593 mRNA_5226: 13594 - K12472 EPS15 epidermal growth factor receptor substrate 15, at 196713 to 201520 13594

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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191,639 - 13592 mRNA_5224 0.51 0.2
191,666 + 13592 mRNA_5224 0.52 0.0
191,695 + 13592 mRNA_5224 0.54 -0.4
191,823 + 13592 mRNA_5224 0.63 -1.4
191,827 - 13592 mRNA_5224 0.63 1.0
191,981 - 13592 mRNA_5224 0.74 -0.8
191,992 + 13592 mRNA_5224 0.75 -1.8
192,170 + 13592 mRNA_5224 0.87 2.2
192,188 + 13592 mRNA_5224 0.88 2.4
192,191 + 13592 mRNA_5224 0.88 -0.2
192,194 + 13592 mRNA_5224 0.88 -0.3
192,200 - 13592 mRNA_5224 0.89 1.8
192,255 + -1.1
192,276 - 1.4
192,289 - -1.1
192,290 + -0.8
192,416 - -0.9
192,423 - -0.3
192,433 - -1.3
192,435 + -0.3
192,439 - 0.6
192,500 + -0.3
192,609 - 0.1
192,714 + 1.5
192,763 - -0.3
192,876 + -1.0
193,022 + 13593 mRNA_5225 0.11 -0.1
193,032 - 13593 mRNA_5225 0.11 0.4
193,053 + 13593 mRNA_5225 0.11 0.1
193,193 + 13593 mRNA_5225 0.15 -0.2
193,281 - 13593 mRNA_5225 0.17 -1.0
193,295 - 13593 mRNA_5225 0.18 0.3
193,396 + 13593 mRNA_5225 0.21 0.6
193,648 + 13593 mRNA_5225 0.27 -0.2
193,724 + 13593 mRNA_5225 0.29 0.2
194,037 + 13593 mRNA_5225 0.38 0.2
194,083 + 13593 mRNA_5225 0.39 2.7
194,085 - 13593 mRNA_5225 0.39 1.9
194,231 - 13593 mRNA_5225 0.43 0.5
194,266 + 13593 mRNA_5225 0.44 2.4
194,359 - 13593 mRNA_5225 0.46 1.7
194,536 + 13593 mRNA_5225 0.51 -0.0
194,596 - 13593 mRNA_5225 0.53 0.1
194,647 - 13593 mRNA_5225 0.54 -0.3
194,652 + 13593 mRNA_5225 0.54 -1.1
194,671 - 13593 mRNA_5225 0.55 3.7
194,677 + 13593 mRNA_5225 0.55 3.0
194,760 + 13593 mRNA_5225 0.57 1.8
194,905 - 13593 mRNA_5225 0.61 2.4
194,915 + 13593 mRNA_5225 0.61 -0.3
195,068 + 13593 mRNA_5225 0.65 0.4
195,098 - 13593 mRNA_5225 0.66 0.4
195,228 + 13593 mRNA_5225 0.70 1.1
195,323 - 13593 mRNA_5225 0.72 -0.7
195,362 - 13593 mRNA_5225 0.73 -0.4
195,474 - 13593 mRNA_5225 0.76 0.8
195,477 + 13593 mRNA_5225 0.76 2.3
195,629 + 13593 mRNA_5225 0.80 -1.2
195,639 + 13593 mRNA_5225 0.80 1.5
195,841 + 13593 mRNA_5225 0.86 0.6
195,844 - 13593 mRNA_5225 0.86 0.3
195,871 + 13593 mRNA_5225 0.87 0.3
195,939 + 13593 mRNA_5225 0.89 1.2
196,229 - -0.1
196,229 - -0.4
196,568 - 1.5
196,726 - 0.2
196,737 + -0.4
196,746 + -0.8
196,860 + -0.8
196,993 - 1.9
197,000 + -1.0
197,011 - 1.1
197,013 - -0.3
197,143 - 1.5
197,281 + 13594 mRNA_5226 0.12 1.2