Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5224

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5223: 13591 - Hypothetical Protein, at 189064 to 190572 13591 mRNA_5224: 13592 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 190897 to 192363 13592 mRNA_5225: 13593 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 192628 to 196368 13593

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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190,047 - 13591 mRNA_5223 0.65 0.6
190,069 + 13591 mRNA_5223 0.67 3.7
190,327 - 13591 mRNA_5223 0.84 1.0
190,343 + 13591 mRNA_5223 0.85 -2.0
190,385 - 13591 mRNA_5223 0.88 -0.5
190,385 - 13591 mRNA_5223 0.88 1.1
190,403 - 13591 mRNA_5223 0.89 0.7
190,765 - -1.6
190,771 - -0.6
190,781 - 2.1
190,879 + 0.2
190,941 - 0.7
190,943 + -0.5
190,960 + -0.8
191,055 + 13592 mRNA_5224 0.11 0.5
191,086 + 13592 mRNA_5224 0.13 -0.3
191,096 - 13592 mRNA_5224 0.14 0.1
191,104 - 13592 mRNA_5224 0.14 1.5
191,117 + 13592 mRNA_5224 0.15 0.2
191,197 + 13592 mRNA_5224 0.20 0.5
191,232 - 13592 mRNA_5224 0.23 -0.4
191,266 + 13592 mRNA_5224 0.25 2.1
191,282 + 13592 mRNA_5224 0.26 0.6
191,639 - 13592 mRNA_5224 0.51 0.2
191,666 + 13592 mRNA_5224 0.52 0.0
191,695 + 13592 mRNA_5224 0.54 -0.4
191,823 + 13592 mRNA_5224 0.63 -1.4
191,827 - 13592 mRNA_5224 0.63 1.0
191,981 - 13592 mRNA_5224 0.74 -0.8
191,992 + 13592 mRNA_5224 0.75 -1.8
192,170 + 13592 mRNA_5224 0.87 2.2
192,188 + 13592 mRNA_5224 0.88 2.4
192,191 + 13592 mRNA_5224 0.88 -0.2
192,194 + 13592 mRNA_5224 0.88 -0.3
192,200 - 13592 mRNA_5224 0.89 1.8
192,255 + -1.1
192,276 - 1.4
192,289 - -1.1
192,290 + -0.8
192,416 - -0.9
192,423 - -0.3
192,433 - -1.3
192,435 + -0.3
192,439 - 0.6
192,500 + -0.3
192,609 - 0.1
192,714 + 1.5
192,763 - -0.3
192,876 + -1.0
193,022 + 13593 mRNA_5225 0.11 -0.1
193,032 - 13593 mRNA_5225 0.11 0.4
193,053 + 13593 mRNA_5225 0.11 0.1
193,193 + 13593 mRNA_5225 0.15 -0.2
193,281 - 13593 mRNA_5225 0.17 -1.0
193,295 - 13593 mRNA_5225 0.18 0.3