Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5222

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5221: 13589 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 184059 to 187472 13589 mRNA_5222: 13590 - Hypothetical Protein, at 187738 to 188641 13590 mRNA_5223: 13591 - Hypothetical Protein, at 189064 to 190572 13591

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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187,013 + 13589 mRNA_5221 0.87 1.5
187,395 - 3.0
187,538 + -0.0
187,561 + -0.4
187,569 + 2.5
187,712 + -0.1
187,739 + -1.8
187,822 + -1.5
188,021 - 13590 mRNA_5222 0.31 0.2
188,189 + 13590 mRNA_5222 0.50 2.1
188,435 + 13590 mRNA_5222 0.77 3.4
188,604 - 3.0
188,663 + -0.5
188,901 + 0.6
188,973 - 0.3
189,016 - 1.0
189,038 + 1.8
189,041 + 0.2
189,046 - 0.5
189,048 + -1.4
189,227 + 13591 mRNA_5223 0.11 -0.6
189,379 + 13591 mRNA_5223 0.21 -0.6
189,453 - 13591 mRNA_5223 0.26 1.5
189,475 - 13591 mRNA_5223 0.27 -1.9
189,490 + 13591 mRNA_5223 0.28 -0.5
189,620 - 13591 mRNA_5223 0.37 -0.9