Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5212

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5211: 13579 - BLAST related to UPF0768 protein YBL029C-A [Zygosaccharomyc..., at 158362 to 159031 13579 mRNA_5212: 13580 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 159635 to 162568 13580 mRNA_5213: 13581 - Hypothetical Protein, at 163193 to 164200 13581

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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158,736 - 13579 mRNA_5211 0.56 -0.1
158,760 + 13579 mRNA_5211 0.59 0.4
159,192 - -1.5
159,462 + -3.1
160,335 - 13580 mRNA_5212 0.24 0.8
160,426 + 13580 mRNA_5212 0.27 0.7
160,785 + 13580 mRNA_5212 0.39 2.3
161,192 + 13580 mRNA_5212 0.53 1.7
161,212 + 13580 mRNA_5212 0.54 1.3
161,227 + 13580 mRNA_5212 0.54 0.5
161,359 - 13580 mRNA_5212 0.59 1.8
161,482 - 13580 mRNA_5212 0.63 -0.4
162,052 + 13580 mRNA_5212 0.82 0.4
162,534 - -0.4
162,659 + 2.5
162,665 - 1.1
162,667 + 0.7
162,673 - -1.7
162,673 + -0.4
162,673 + 0.9
162,684 - 0.2
162,686 + 0.3
162,688 + 1.9
162,690 - -0.4
162,709 - -0.1
162,712 + -0.9
162,713 - -1.3
162,713 - 1.8
162,713 + 0.1
162,716 + 0.1
162,718 + 0.8
162,720 + -1.7
162,742 - -0.5
162,748 + -1.2
162,761 - 1.6
162,779 - 1.3
162,782 - 1.1
162,792 - 0.6
162,806 - 0.2
162,807 - 3.8
162,822 + -0.8
162,835 - 0.0
162,863 + 1.2
162,879 + -0.4
162,981 + 2.1
163,070 - 0.8
163,385 + 13581 mRNA_5213 0.19 -0.4
163,453 - 13581 mRNA_5213 0.26 -0.6