Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5206

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5205: 13573 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 148303 to 148964 13573 mRNA_5206: 13574 - HMMPfam-Ubiquitin family-PF00240,ProSiteProfiles-Ubiquitin domain profile.-PS50053,SMART-Ubiquitin homologues-SM00213,SUPERFAMILY--SSF54236, at 149878 to 151168 13574

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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148,931 + 1.1
148,961 + 0.8
149,102 - -0.8
149,178 - 0.7
149,279 - 0.6
149,388 + 0.9
149,434 - -0.2
149,455 - 0.2
149,524 + 1.0
149,548 - 0.3
149,606 - -0.1
149,608 + -2.7
149,675 - -1.2
149,699 + 1.0
149,871 + -0.9
150,121 - 13574 mRNA_5206 0.19 0.4
150,219 + 13574 mRNA_5206 0.26 3.1
150,437 - 13574 mRNA_5206 0.43 -0.1
150,516 + 13574 mRNA_5206 0.49 -0.2
150,543 - 13574 mRNA_5206 0.52 -3.5
150,578 + 13574 mRNA_5206 0.54 -0.9
150,654 - 13574 mRNA_5206 0.60 0.2
150,861 - 13574 mRNA_5206 0.76 -0.5
151,003 - 13574 mRNA_5206 0.87 0.3
151,269 - 1.8
151,280 + 0.1
151,285 + 0.5
151,835 + 1.0
151,981 + 0.8
152,026 + 0.2