Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5195

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122774 to 124635 13562 mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125333 to 126456 13563 mRNA_5196: 13564 - K17218 sqr sulfide-quinone oxidoreductase, at 126891 to 128997 13564

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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124,511 - 0.6
124,556 - 2.8
124,583 - 0.9
124,586 - 0.5
124,591 - -0.2
124,616 + 3.0
124,624 - -0.2
124,645 + 0.3
124,732 - 2.5
124,773 + -1.0
124,775 + 1.1
124,775 + 0.9
124,776 - -0.7
124,781 + 1.8
124,784 - 0.3
124,788 + 3.8
124,798 + 1.3
124,798 + 3.0
124,801 - -1.2
124,803 + 0.7
124,805 - -0.9
124,807 + 0.5
124,812 + 0.1
124,896 + -1.0
124,927 + -0.4
124,941 - 1.4
124,961 - 2.0
124,963 + 0.5
124,968 - 0.5
124,968 + 0.1
124,968 + -0.3
124,970 - 1.7
124,972 + 0.6
124,975 + 0.1
124,983 + -1.5
124,984 + -0.5
125,005 - 0.5
125,016 + 2.3
125,040 - 1.4
125,043 - -0.1
125,050 + -0.4
125,223 + 1.3
125,227 + -1.4
125,665 + 13563 mRNA_5195 0.30 2.9
125,668 + 13563 mRNA_5195 0.30 0.6
125,816 - 13563 mRNA_5195 0.43 1.0
125,816 + 13563 mRNA_5195 0.43 -0.4
125,957 - 13563 mRNA_5195 0.56 0.6
126,343 + 13563 mRNA_5195 0.90 0.6
126,364 + 0.1
126,411 - 0.7
126,498 - -0.3
126,511 + -0.1
126,518 - -0.7
126,524 - -0.1
126,532 + 1.0
126,540 + -0.6
126,540 + -0.4
126,668 + -0.1
126,684 - 0.1
126,695 + -1.8
126,697 + -0.2
126,704 + -1.0
126,711 - 1.0
126,810 - -0.4
126,816 - 1.1
126,817 + -0.7
126,839 + 0.5
126,924 + 0.8
127,006 + 0.6
127,171 + 13564 mRNA_5196 0.13 0.3
127,303 + 13564 mRNA_5196 0.20 2.1
127,305 - 13564 mRNA_5196 0.20 -0.1
127,430 + 13564 mRNA_5196 0.26 1.8
127,443 + 13564 mRNA_5196 0.26 0.1
127,443 - 13564 mRNA_5196 0.26 0.6