Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5194

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119123 to 121882 13561 mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122774 to 124635 13562 mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125333 to 126456 13563

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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121,975 - 0.0
121,978 + 0.2
121,994 - -0.5
122,124 - 1.5
122,163 + 0.7
122,163 + 0.3
122,179 + -0.1
122,191 + 1.4
122,192 + 0.6
122,269 - -0.4
122,274 - -0.8
122,274 - -0.1
122,280 - -0.0
122,280 + 1.1
122,404 - -2.2
122,445 - 0.8
122,468 + 0.7
122,469 - -0.7
122,473 + -0.4
122,474 + 1.0
122,518 - -0.5
122,519 + 1.2
122,546 - 1.5
122,566 - -0.3
122,570 + -0.7
122,572 + 0.9
122,592 - -0.8
122,595 + 1.4
122,601 + 0.5
122,608 - 0.4
122,625 + 2.1
122,757 + -1.3
122,909 + -0.2
122,912 + 1.2
123,451 + 13562 mRNA_5194 0.36 -0.6
123,451 - 13562 mRNA_5194 0.36 -0.2
123,658 + 13562 mRNA_5194 0.47 -0.3
124,022 - 13562 mRNA_5194 0.67 2.7
124,022 - 13562 mRNA_5194 0.67 0.1
124,052 - 13562 mRNA_5194 0.69 1.5
124,183 + 13562 mRNA_5194 0.76 2.7
124,241 - 13562 mRNA_5194 0.79 -0.1
124,511 - 0.6
124,556 - 2.8
124,583 - 0.9
124,586 - 0.5
124,591 - -0.2
124,616 + 3.0
124,624 - -0.2
124,645 + 0.3
124,732 - 2.5
124,773 + -1.0
124,775 + 1.1
124,775 + 0.9
124,776 - -0.7
124,781 + 1.8
124,784 - 0.3
124,788 + 3.8
124,798 + 1.3
124,798 + 3.0
124,801 - -1.2
124,803 + 0.7
124,805 - -0.9
124,807 + 0.5
124,812 + 0.1
124,896 + -1.0
124,927 + -0.4
124,941 - 1.4
124,961 - 2.0
124,963 + 0.5
124,968 - 0.5
124,968 + 0.1
124,968 + -0.3
124,970 - 1.7
124,972 + 0.6
124,975 + 0.1
124,983 + -1.5
124,984 + -0.5
125,005 - 0.5
125,016 + 2.3
125,040 - 1.4
125,043 - -0.1
125,050 + -0.4
125,223 + 1.3
125,227 + -1.4