Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5187

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5186: 13554 - KOG0023 Alcohol dehydrogenase, class V, at 101538 to 103195 13554 mRNA_5187: 13555 - KOG2533 Permease of the major facilitator superfamily, at 103886 to 106875 13555 mRNA_5188: 13556 - HMMPfam-Protein of unknown function (DUF3421)-PF11901,SMART-Repeats found in Drosophila proteins.-SM00696, at 107668 to 108466 13556

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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103,250 - 0.4
103,414 + 0.2
103,587 - -0.9
103,612 + -0.9
103,729 + -1.0
103,740 + 2.1
103,896 - 1.5
104,470 - 13555 mRNA_5187 0.20 -0.7
104,698 + 13555 mRNA_5187 0.27 0.1
104,726 - 13555 mRNA_5187 0.28 3.0
104,752 + 13555 mRNA_5187 0.29 0.8
104,905 + 13555 mRNA_5187 0.34 -0.1
105,044 + 13555 mRNA_5187 0.39 0.0
105,044 + 13555 mRNA_5187 0.39 -0.2
105,048 - 13555 mRNA_5187 0.39 -0.2
105,656 - 13555 mRNA_5187 0.59 0.0
106,660 - 1.9
106,948 + 2.3
106,949 - 1.3
106,955 + -2.3
106,962 - 1.7
106,982 + 0.8
106,990 + 1.1
107,017 + -0.8
107,018 + 0.4
107,022 + -0.6
107,025 + -0.9
107,046 - -1.6
107,049 + -1.9
107,051 + 0.1
107,053 + 1.1
107,068 - 1.3
107,072 - -0.6
107,078 + 0.2
107,090 + -0.4
107,093 - -0.4
107,094 + 0.3
107,097 + -0.3
107,138 - -0.0
107,144 - 2.5
107,153 - 1.3
107,167 + -2.8
107,172 + 1.5
107,173 + 0.3
107,176 - 0.5
107,275 + 0.6
107,328 + -0.2
107,341 - 0.6
107,355 + -1.3
107,355 + 1.2
107,362 - -0.9
107,433 - 0.1
107,436 + 2.8
107,438 + 0.5
107,459 - 0.6
107,468 + 0.0
107,587 + -0.8
107,618 - -0.2
107,749 - 13556 mRNA_5188 0.10 0.2
107,763 - 13556 mRNA_5188 0.12 0.5
107,767 - 13556 mRNA_5188 0.12 -1.3
107,784 - 13556 mRNA_5188 0.15 0.6