Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5172

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5172: 13540 - BLAST similar to An11g07040 [Aspergillus kawachii IFO 4308], at 70106 to 71183 13540

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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69,193 - 0.0
69,193 - -0.3
69,200 + 0.2
69,208 - -0.6
69,327 - -2.0
69,331 - 0.8
69,333 - 0.0
69,337 - 1.0
69,338 + 1.2
69,351 + 0.1
69,355 + 1.8
69,462 - 1.3
69,476 + 0.2
69,499 + 0.3
69,500 - -0.6
69,502 + -0.6
69,503 - 0.7
69,511 + 2.7
69,519 + -0.7
69,643 - -0.1
69,643 + 1.8
69,643 + 2.8
69,645 + 0.6
69,646 - 1.7
69,650 - 0.6
69,652 + 1.3
69,652 + -0.7
69,653 + -0.5
69,653 + 0.6
69,656 + 3.6
69,676 + -1.0
69,690 + 0.4
69,694 + 2.1
69,696 + 1.9
69,698 - 0.4
69,710 - 0.0
69,730 - 0.5
69,732 + -0.0
69,734 + 0.4
69,737 - 0.0
69,742 + -0.9
69,746 + 0.1
69,749 + -0.2
69,761 + 1.4
69,762 + 1.3
69,770 - -0.7
69,779 - 1.2
69,782 + -1.8
69,788 + -0.3
69,840 - 0.7
69,853 - -0.6
69,864 + 0.8
70,124 + 1.5
70,141 + -0.1
70,147 - 0.4
70,148 + -1.2
70,161 + -0.3
70,163 - 0.2
70,164 + 0.3
70,274 - 13540 mRNA_5172 0.16 1.4
70,278 - 13540 mRNA_5172 0.16 -0.4
70,323 - 13540 mRNA_5172 0.20 -0.2
70,427 - 13540 mRNA_5172 0.30 0.3
70,457 - 13540 mRNA_5172 0.33 -0.4
70,508 + 13540 mRNA_5172 0.37 0.5
70,550 + 13540 mRNA_5172 0.41 -0.7
70,551 - 13540 mRNA_5172 0.41 0.3
70,554 + 13540 mRNA_5172 0.42 -0.6
70,558 - 13540 mRNA_5172 0.42 0.3
70,603 - 13540 mRNA_5172 0.46 -2.4
70,621 - 13540 mRNA_5172 0.48 -1.8
70,621 - 13540 mRNA_5172 0.48 -2.2
70,687 - 13540 mRNA_5172 0.54 0.2
70,702 - 13540 mRNA_5172 0.55 0.5
70,709 + 13540 mRNA_5172 0.56 0.2
70,762 - 13540 mRNA_5172 0.61 3.1
70,797 + 13540 mRNA_5172 0.64 0.9
70,811 + 13540 mRNA_5172 0.65 0.4
70,825 - 13540 mRNA_5172 0.67 0.8
70,831 + 13540 mRNA_5172 0.67 -0.2
70,842 - 13540 mRNA_5172 0.68 -0.5
70,863 + 13540 mRNA_5172 0.70 -1.0
70,863 - 13540 mRNA_5172 0.70 0.9
70,863 + 13540 mRNA_5172 0.70 3.9
70,872 - 13540 mRNA_5172 0.71 1.6
70,876 - 13540 mRNA_5172 0.71 2.1
70,876 + 13540 mRNA_5172 0.71 -0.4
70,877 + 13540 mRNA_5172 0.72 1.3
70,880 + 13540 mRNA_5172 0.72 0.0
70,887 + 13540 mRNA_5172 0.72 1.0
70,890 - 13540 mRNA_5172 0.73 1.8
70,894 - 13540 mRNA_5172 0.73 1.8
70,895 + 13540 mRNA_5172 0.73 2.4
70,896 - 13540 mRNA_5172 0.73 0.5
70,896 - 13540 mRNA_5172 0.73 -0.3
70,898 + 13540 mRNA_5172 0.73 0.5
70,919 - 13540 mRNA_5172 0.75 -1.0
70,928 + 13540 mRNA_5172 0.76 0.5
70,932 + 13540 mRNA_5172 0.77 -0.2
70,935 + 13540 mRNA_5172 0.77 -0.5
70,941 - 13540 mRNA_5172 0.77 1.0
70,954 + 13540 mRNA_5172 0.79 0.4
70,993 - 13540 mRNA_5172 0.82 -0.8
70,997 - 13540 mRNA_5172 0.83 -0.4
71,023 + 13540 mRNA_5172 0.85 0.1
71,024 + 13540 mRNA_5172 0.85 0.4
71,038 + 13540 mRNA_5172 0.86 2.0
71,042 + 13540 mRNA_5172 0.87 0.4
71,042 + 13540 mRNA_5172 0.87 1.2
71,048 - 13540 mRNA_5172 0.87 0.4
71,065 + 13540 mRNA_5172 0.89 2.3
71,074 + 13540 mRNA_5172 0.90 2.5
71,121 - -0.1
71,166 + 0.3
71,171 + 0.3
71,172 + -3.4
71,205 - 1.5
71,291 - 1.3
71,304 - 1.9
71,306 + 0.4
71,308 - 0.4
71,309 + -1.2
71,310 + 0.9
71,312 - 0.4
71,316 + 2.0
71,317 + 2.2
71,318 + 0.6
71,319 + 0.1
71,320 + -1.0
71,321 - 0.5
71,322 - 0.5
71,322 + 0.0
71,327 + 0.1
71,327 - -0.8
71,330 - -0.4
71,332 - 0.9
71,337 + -1.1
71,338 - -0.0
71,338 + 1.4
71,338 + -0.2
71,342 + -0.3
71,343 - 1.2
71,345 - 0.1
71,346 + 0.6
71,347 + 0.3
71,347 + 2.3
71,348 - 0.8
71,348 + 2.2
71,349 - 2.5
71,350 + 1.1
71,350 - 0.1
71,351 - -0.7
71,352 + 0.2
71,352 + 0.3
71,352 + -0.4
71,354 + -0.9
71,355 - -1.0
71,355 - 2.4
71,360 - -0.7
71,363 + -1.8
71,365 + 0.9
71,367 + -0.5
71,367 + -0.7
71,368 - 0.1
71,369 + 1.7
71,369 + 0.6
71,371 + 2.8
71,372 + -1.0
71,374 - 0.5
71,374 - -1.9
71,396 - 0.5
71,397 + 1.3
71,405 - 2.8
71,410 + 0.3
71,413 + -0.7
71,414 + -0.3
71,414 - -0.1
71,416 - 0.5
71,417 + -2.1
71,418 - -0.3
71,419 - -0.1
71,422 + -1.2
71,430 + 1.1
71,430 + 2.1
71,432 + -1.6
71,432 - 0.3
71,433 - 0.7
71,435 - 2.1
71,435 - -1.7
71,435 + -0.2
71,436 - -0.5
71,436 - 0.5
71,436 + -0.3
71,441 + -0.3
71,441 + 0.4
71,443 - 0.5
71,444 + -1.1
71,450 + -0.0
71,451 + -0.9
71,451 + -0.4
71,452 - 0.4
71,452 + 1.5
71,452 + -0.1
71,456 + 1.3
71,458 + 0.3
71,459 - -2.2
71,463 - -1.8
71,465 - 0.9
71,473 - 3.5
71,482 - -1.5
71,504 + 0.7
71,513 - 1.3
71,530 - 0.5
71,531 - 0.3
71,534 - 0.4
71,543 + -0.1
71,544 - 0.8
71,544 - 1.5
71,559 - 1.7
71,560 - 0.4
71,560 - -1.1
71,568 + -0.0
71,574 + 0.2
71,575 - -0.4
71,577 - 0.6
71,581 + -0.8
71,585 - -1.2
71,594 + -0.4
71,604 + -0.9
71,604 - 0.3
71,634 + 1.9
71,634 - -2.1
71,636 + -1.7
71,640 - 0.1
71,678 - -0.6
71,699 + 2.0
71,706 + -0.4
71,727 - -0.8
71,727 - 1.9
71,731 + -0.3
71,731 + 1.5
71,732 + 0.7
71,735 + 0.9
71,736 + -1.2
71,740 + 0.3
71,741 - -1.3
71,744 + 0.2
71,745 + -0.4
71,751 + -0.4
71,751 - 0.5
71,752 - 1.6
71,757 - 0.5
71,762 - 0.7
71,764 + 2.0
71,771 - -0.6
71,774 - 0.9
71,775 - -0.6
71,776 + 3.3
71,782 - 2.0
71,783 - 2.7
71,789 + 0.9
71,790 - -0.6
71,793 + 0.5
71,797 - 1.1
71,797 + 1.9
71,797 + 1.7
71,798 + 2.6
71,803 - -0.1
71,804 - 0.5
71,805 + 1.5
71,829 + 0.8
71,837 - -0.1
71,837 + 2.3
71,849 + -2.3
71,852 + 1.0
71,853 - 0.3
71,862 + -1.7
71,862 + 1.3
71,863 - 1.8
71,865 + -0.5
71,866 + -0.5
71,868 + 0.1
71,868 + -0.5
71,869 - -0.2
71,877 - 0.9
71,962 - -0.1
71,965 - -1.0
71,990 - 1.0
71,995 + 1.1
72,003 + -0.5
72,006 + 0.2
72,012 - -1.9
72,013 - 0.6
72,014 - -0.4
72,028 + 0.7
72,035 - -0.0
72,146 - -0.2
72,146 - 0.9
72,146 - 3.0
72,150 - 1.6
72,163 + 0.5