Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5166

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5165: 13533 - Hypothetical Protein, at 52326 to 52658 13533 mRNA_5166: 13534 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 53307 to 58220 13534 mRNA_5167: 13535 - Hypothetical Protein, at 58782 to 59470 13535

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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52,359 + 0.3
52,371 - 13533 mRNA_5165 0.14 1.8
52,372 + 13533 mRNA_5165 0.14 -0.2
52,438 + 13533 mRNA_5165 0.34 -0.2
52,453 + 13533 mRNA_5165 0.38 1.3
52,460 - 13533 mRNA_5165 0.40 -0.9
52,486 - 13533 mRNA_5165 0.48 -0.0
52,507 - 13533 mRNA_5165 0.54 1.7
52,510 - 13533 mRNA_5165 0.55 0.6
52,510 - 13533 mRNA_5165 0.55 3.1
52,517 + 13533 mRNA_5165 0.57 -0.3
52,520 + 13533 mRNA_5165 0.58 1.5
52,522 + 13533 mRNA_5165 0.59 -1.5
52,523 + 13533 mRNA_5165 0.59 -1.0
52,524 - 13533 mRNA_5165 0.59 -0.2
52,528 + 13533 mRNA_5165 0.61 0.2
52,530 - 13533 mRNA_5165 0.61 -1.2
52,536 + 13533 mRNA_5165 0.63 -0.1
52,536 - 13533 mRNA_5165 0.63 -0.4
52,538 - 13533 mRNA_5165 0.64 0.2
52,542 + 13533 mRNA_5165 0.65 0.1
52,543 + 13533 mRNA_5165 0.65 1.8
52,560 + 13533 mRNA_5165 0.70 0.9
52,560 + 13533 mRNA_5165 0.70 1.4
52,561 + 13533 mRNA_5165 0.71 1.8
52,567 - 13533 mRNA_5165 0.72 0.9
52,574 - 13533 mRNA_5165 0.74 -0.6
52,577 + 13533 mRNA_5165 0.75 -0.2
52,581 - 13533 mRNA_5165 0.77 0.6
52,582 + 13533 mRNA_5165 0.77 0.5
52,583 - 13533 mRNA_5165 0.77 1.3
52,584 + 13533 mRNA_5165 0.77 -0.7
52,586 + 13533 mRNA_5165 0.78 1.2
52,596 - 13533 mRNA_5165 0.81 1.6
52,603 - 13533 mRNA_5165 0.83 0.9
52,648 - 0.3
52,814 + -0.4
52,957 - -0.2
53,154 + 0.3
53,936 + 13534 mRNA_5166 0.13 -0.1
54,087 + 13534 mRNA_5166 0.16 -0.5
54,171 + 13534 mRNA_5166 0.18 0.8
54,289 - 13534 mRNA_5166 0.20 -1.2
54,615 - 13534 mRNA_5166 0.27 1.1
54,694 - 13534 mRNA_5166 0.28 0.8
54,703 + 13534 mRNA_5166 0.28 0.4
55,015 + 13534 mRNA_5166 0.35 0.6
55,358 - 13534 mRNA_5166 0.42 1.9
55,381 + 13534 mRNA_5166 0.42 0.1
55,454 - 13534 mRNA_5166 0.44 -0.2
55,488 - 13534 mRNA_5166 0.44 -0.0
55,551 - 13534 mRNA_5166 0.46 2.3
55,610 - 13534 mRNA_5166 0.47 -0.9
55,699 + 13534 mRNA_5166 0.49 -0.2
55,755 - 13534 mRNA_5166 0.50 0.4
55,818 - 13534 mRNA_5166 0.51 0.6
56,002 - 13534 mRNA_5166 0.55 -0.3
56,206 + 13534 mRNA_5166 0.59 2.6
56,276 + 13534 mRNA_5166 0.60 -0.2
56,329 + 13534 mRNA_5166 0.61 1.2
56,522 + 13534 mRNA_5166 0.65 1.0
56,566 - 13534 mRNA_5166 0.66 -0.2
57,009 + 13534 mRNA_5166 0.75 -2.2
57,441 - 13534 mRNA_5166 0.84 -2.5
57,607 + 13534 mRNA_5166 0.88 0.0
57,706 + 13534 mRNA_5166 0.90 0.7
57,707 - 13534 mRNA_5166 0.90 1.2
57,858 - 0.5
57,867 + -0.4
57,896 + 1.7
58,295 - 4.0
58,464 + -0.7
58,586 - 0.8
58,589 - 2.6
58,613 - 1.4
58,633 - 4.2
58,734 + 0.0
59,032 - 13535 mRNA_5167 0.36 1.0
59,174 + 13535 mRNA_5167 0.57 0.3
59,187 + 13535 mRNA_5167 0.59 -0.1
59,189 + 13535 mRNA_5167 0.59 -0.1