Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5156

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30718 to 32151 13523 mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32964 to 35897 13524 mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36318 to 38711 13525

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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32,279 - 0.8
32,281 - 0.1
32,367 + 0.4
32,367 + 0.4
32,371 + 1.1
32,375 + 1.4
32,377 - 0.1
32,387 - -0.1
32,387 - 0.3
32,387 - -3.0
32,387 - 0.7
32,395 + 1.1
32,395 + 0.3
32,395 + -0.2
32,395 + 2.3
32,395 + 0.9
32,503 - 3.0
32,554 + -0.2
32,562 + 0.1
32,708 + 0.6
32,710 + 1.0
32,783 + 1.1
32,809 + 1.3
32,835 + 2.1
32,859 + -2.3
32,893 - -0.8
32,898 - 2.7
33,147 - 0.1
33,182 - 0.4
33,268 - 13524 mRNA_5156 0.10 1.9
33,285 - 13524 mRNA_5156 0.11 -1.6
33,452 - 13524 mRNA_5156 0.17 0.9
33,461 - 13524 mRNA_5156 0.17 -0.0
33,463 - 13524 mRNA_5156 0.17 0.4
33,482 + 13524 mRNA_5156 0.18 3.1
33,508 + 13524 mRNA_5156 0.19 1.2
33,613 + 13524 mRNA_5156 0.22 0.5
33,869 + 13524 mRNA_5156 0.31 1.7
33,885 + 13524 mRNA_5156 0.31 -1.5
34,645 - 13524 mRNA_5156 0.57 1.3
34,665 - 13524 mRNA_5156 0.58 0.9
34,809 - 13524 mRNA_5156 0.63 0.1
34,960 - 13524 mRNA_5156 0.68 -0.4
34,961 - 13524 mRNA_5156 0.68 1.1
34,998 + 13524 mRNA_5156 0.69 1.3
35,406 - 13524 mRNA_5156 0.83 1.2
35,499 - 13524 mRNA_5156 0.86 -1.0
35,517 + 13524 mRNA_5156 0.87 0.8
35,667 - 1.8
35,828 - -0.2
35,836 + -1.2
35,981 - 1.8
36,100 + 1.2
36,103 - 0.0
36,108 + 2.3
36,154 - 2.2
36,161 + -1.2
36,296 + 0.6
36,535 - 1.6
36,535 - 0.6
36,579 - 13525 mRNA_5157 0.11 0.3
36,585 + 13525 mRNA_5157 0.11 0.3
36,662 + 13525 mRNA_5157 0.14 0.6
36,693 + 13525 mRNA_5157 0.16 0.5
36,834 + 13525 mRNA_5157 0.22 3.5
36,847 + 13525 mRNA_5157 0.22 1.2