Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5153

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5152: 13520 - HMMPfam-Domain of unknown function (DUF4336)-PF14234,SUPERFAMILY--SSF56281, at 24796 to 26164 13520 mRNA_5153: 13521 - HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474, at 26390 to 28027 13521 mRNA_5154: 13522 - HMMPfam-Beta-lactamase superfamily domain-PF12706,SUPERFAMILY--SSF56281, at 28775 to 30256 13522

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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25,507 + 13520 mRNA_5152 0.52 1.0
25,738 + 13520 mRNA_5152 0.69 0.4
25,768 - 13520 mRNA_5152 0.71 2.3
25,772 - 13520 mRNA_5152 0.71 0.5
25,811 + 13520 mRNA_5152 0.74 3.0
25,917 + 13520 mRNA_5152 0.82 -0.4
25,923 - 13520 mRNA_5152 0.82 0.3
25,952 + 13520 mRNA_5152 0.84 1.3
25,974 - 13520 mRNA_5152 0.86 -0.4
26,033 + 0.7
26,065 - 0.9
26,078 + 1.2
26,083 + -0.9
26,083 + -0.2
26,217 + 0.8
26,245 - -0.0
26,534 + 3.1
26,614 + 13521 mRNA_5153 0.14 -0.1
26,778 - 13521 mRNA_5153 0.24 1.1
26,792 - 13521 mRNA_5153 0.25 -0.0
26,932 + 13521 mRNA_5153 0.33 0.2
27,057 - 13521 mRNA_5153 0.41 -1.0
27,091 - 13521 mRNA_5153 0.43 0.3
27,502 - 13521 mRNA_5153 0.68 3.4
27,748 + 13521 mRNA_5153 0.83 -0.4
28,099 + 0.5
28,145 - -1.5
28,145 - 2.1
28,215 - 2.2
28,234 + 2.0
28,261 + 0.2
28,285 - 0.3
28,343 - 0.0
28,366 + 0.3
28,372 - 1.7
28,395 - 0.7
28,414 - -0.4
28,414 + -0.6
28,416 + 0.3
28,427 + -0.8
28,551 + -0.2
28,693 - 0.1
28,730 + 1.1
28,850 - -1.2
28,856 + 0.8
29,009 + 13522 mRNA_5154 0.16 0.6