Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5137

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5136: 13504 - BLAST MYB DNA-binding domain protein [Macrophomina phaseoli..., at 1839816 to 1840478 13504 mRNA_5137: 13505 - K13342 PEX5, PXR1 peroxin-5, at 1840835 to 1843889 13505 mRNA_5138: 13506 - K20359 RABAC1, PRAF1 PRA1 family protein 1, at 1844038 to 1845081 13506

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,839,955 + 13504 mRNA_5136 0.21 -0.3
1,840,084 + 13504 mRNA_5136 0.40 -0.4
1,840,509 - 0.1
1,840,535 - -0.2
1,840,652 - 0.2
1,840,664 - 2.3
1,840,672 + -0.9
1,840,672 - -1.4
1,840,674 + 0.6
1,840,683 - -1.1
1,840,684 - 3.2
1,840,704 - 0.3
1,840,722 + 0.1
1,840,852 - 1.1
1,841,132 - -0.2
1,842,968 + 13505 mRNA_5137 0.70 -0.1
1,843,027 - 13505 mRNA_5137 0.72 1.3
1,843,097 - 13505 mRNA_5137 0.74 -0.2
1,843,238 + 13505 mRNA_5137 0.79 -0.1
1,843,372 + 13505 mRNA_5137 0.83 1.8
1,843,385 + 13505 mRNA_5137 0.83 0.4
1,843,553 + 13505 mRNA_5137 0.89 -1.4
1,843,664 + -0.4
1,843,793 - 0.3
1,843,810 + 2.3
1,843,942 - -0.6
1,843,951 - -0.1
1,843,957 - -0.1
1,843,979 - 0.0
1,843,981 - 1.1
1,843,982 + 0.3
1,843,982 - 0.2
1,843,995 - 0.1
1,843,996 + 0.3
1,844,120 + 0.6
1,844,411 + 13506 mRNA_5138 0.36 -0.2
1,844,668 - 13506 mRNA_5138 0.60 -0.4
1,844,730 - 13506 mRNA_5138 0.66 1.8
1,844,861 + 13506 mRNA_5138 0.79 0.9