Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5117

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5116: 13484 - K00721 DPM1 dolichol-phosphate mannosyltransferase, at 1796200 to 1797488 13484 mRNA_5117: 13485 - KOG0254 Predicted transporter (major facilitator superfamily), at 1797781 to 1800000 13485 mRNA_5118: 13486 - K05349 bglX beta-glucosidase, at 1800635 to 1803494 13486

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,797,421 + -0.8
1,797,701 - 1.5
1,797,724 + 1.1
1,797,728 - 2.0
1,797,758 + -1.6
1,797,881 + -1.1
1,797,924 + 1.2
1,798,159 + 13485 mRNA_5117 0.17 2.1
1,798,160 - 13485 mRNA_5117 0.17 0.5
1,798,198 + 13485 mRNA_5117 0.19 1.4
1,798,782 + 13485 mRNA_5117 0.45 -1.4
1,798,793 - 13485 mRNA_5117 0.46 -1.0
1,798,872 - 13485 mRNA_5117 0.49 0.3
1,798,980 + 13485 mRNA_5117 0.54 0.4
1,799,161 + 13485 mRNA_5117 0.62 2.0
1,799,170 + 13485 mRNA_5117 0.63 -1.4
1,799,765 + 13485 mRNA_5117 0.89 1.3
1,799,777 - 13485 mRNA_5117 0.90 1.0
1,800,066 - 0.6
1,800,073 + -1.7
1,800,346 - 1.1
1,800,349 - -0.4
1,800,360 + -2.5
1,800,389 - 0.0
1,800,392 - -0.7
1,800,396 - 0.2
1,800,431 - -1.0
1,800,432 - -1.3
1,800,435 - 0.8
1,800,436 - -1.2
1,800,439 + -0.2
1,800,442 - 1.5
1,800,445 + 1.0
1,800,456 + 0.3
1,800,458 + 1.3
1,800,466 - -0.3
1,800,491 + -0.5
1,800,509 + 0.5
1,800,516 + 0.6
1,800,617 - -0.1
1,800,664 - 3.1
1,800,669 - 1.1