Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5021

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5020: 13388 - K20178 VPS8 vacuolar protein sorting-associated protein 8, at 1563647 to 1569301 13388 mRNA_5021: 13389 - K14347 SLC10A7, P7 solute carrier family 10 (sodium/bile acid cotransporter), member 7, at 1569492 to 1571260 13389 mRNA_5022: 13390 - Hypothetical Protein, at 1571502 to 1572574 13390

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,568,642 + 13388 mRNA_5020 0.88 -0.0
1,568,965 + -1.8
1,569,242 + -0.5
1,569,361 + -0.2
1,569,375 - 3.5
1,569,382 - 0.4
1,569,390 - 1.7
1,569,413 + -2.6
1,569,413 - -2.4
1,569,415 - -0.4
1,569,419 - 0.2
1,569,495 - -0.1
1,569,562 + -1.9
1,569,700 + 13389 mRNA_5021 0.12 0.2
1,570,438 - 13389 mRNA_5021 0.53 -0.6
1,570,469 - 13389 mRNA_5021 0.55 1.2
1,570,694 + 13389 mRNA_5021 0.68 0.5
1,570,969 + 13389 mRNA_5021 0.83 -0.5
1,571,140 - 0.1
1,571,746 - 13390 mRNA_5022 0.23 -2.2
1,571,842 - 13390 mRNA_5022 0.32 -1.1
1,571,863 + 13390 mRNA_5022 0.34 1.4
1,571,863 + 13390 mRNA_5022 0.34 0.2
1,572,156 - 13390 mRNA_5022 0.61 -1.2