Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5014

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5014: 13382 - K01621 xfp, xpk xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, at 1549250 to 1553078 13382 mRNA_5015: 13383 - K00925 ackA acetate kinase, at 1553559 to 1555008 13383

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,548,271 + 0.9
1,548,279 + 1.0
1,548,297 - -0.1
1,548,299 - 0.6
1,548,302 + -1.3
1,548,305 - 2.8
1,548,311 - 0.3
1,548,311 - -0.2
1,548,342 + 0.5
1,548,346 - -0.4
1,548,355 - 0.9
1,548,361 + 1.9
1,548,362 + 1.5
1,548,363 - -2.0
1,548,365 + 0.0
1,548,369 - 0.2
1,548,375 + 0.1
1,548,380 - 1.5
1,548,385 - 0.4
1,548,385 - -0.3
1,548,397 - -0.8
1,548,398 - 1.3
1,548,403 + -0.4
1,548,404 - 0.9
1,548,411 + 1.0
1,548,412 - 1.3
1,548,416 + -0.8
1,548,421 - -0.7
1,548,423 + 0.6
1,548,426 + -0.2
1,548,435 + 0.5
1,548,461 - 0.6
1,548,488 + -0.5
1,548,503 - 0.5
1,548,544 + 0.7
1,548,571 + 1.8
1,548,594 - -0.2
1,548,609 - 0.9
1,548,613 + -0.3
1,548,616 - 0.1
1,548,627 - 0.5
1,548,631 - 0.5
1,548,633 - 0.6
1,548,643 - -2.7
1,548,651 + 0.4
1,548,654 - 0.3
1,548,655 - 0.9
1,548,655 + 0.6
1,548,662 - 0.0
1,548,665 + 1.2
1,548,676 - 0.2
1,548,716 + -1.2
1,548,724 + 0.3
1,548,725 - 0.9
1,548,757 - -0.0
1,548,757 + 2.0
1,548,760 + -1.0
1,548,761 - -1.0
1,548,806 - -1.6
1,548,825 + 1.0
1,548,829 - -1.7
1,548,858 + 0.1
1,548,904 - 0.5
1,548,947 - -0.3
1,548,951 + 0.2
1,548,959 + -0.5
1,549,046 - -0.6
1,549,092 - 1.0
1,549,101 + -1.0
1,549,102 - 0.9
1,549,127 + 2.0
1,549,151 + 1.7
1,549,152 - 2.0
1,549,187 + 0.9
1,549,217 - -1.3
1,549,282 - -0.4
1,549,342 - 1.0
1,549,372 - 0.5
1,549,382 - 0.8
1,549,415 - 0.8
1,549,503 + 0.3
1,549,519 - -0.7
1,549,589 - -0.6
1,549,591 - -1.0
1,549,684 - 13382 mRNA_5014 0.11 0.3
1,549,697 + 13382 mRNA_5014 0.12 1.0
1,549,941 + 13382 mRNA_5014 0.18 0.8
1,549,983 + 13382 mRNA_5014 0.19 -0.5
1,550,040 + 13382 mRNA_5014 0.21 1.4
1,550,040 + 13382 mRNA_5014 0.21 1.0
1,550,062 + 13382 mRNA_5014 0.21 -0.0
1,550,096 + 13382 mRNA_5014 0.22 0.8
1,550,140 + 13382 mRNA_5014 0.23 3.2
1,550,252 - 13382 mRNA_5014 0.26 -1.1
1,550,368 + 13382 mRNA_5014 0.29 0.1
1,550,372 + 13382 mRNA_5014 0.29 -1.6
1,550,528 + 13382 mRNA_5014 0.33 1.3
1,550,708 - 13382 mRNA_5014 0.38 1.6
1,550,801 - 13382 mRNA_5014 0.41 0.8
1,550,841 + 13382 mRNA_5014 0.42 1.1
1,550,930 + 13382 mRNA_5014 0.44 1.5
1,550,965 + 13382 mRNA_5014 0.45 1.2
1,551,202 - 13382 mRNA_5014 0.51 1.6
1,551,277 + 13382 mRNA_5014 0.53 0.3
1,551,289 - 13382 mRNA_5014 0.53 1.6
1,551,417 - 13382 mRNA_5014 0.57 -1.2
1,551,493 + 13382 mRNA_5014 0.59 -0.0
1,551,626 + 13382 mRNA_5014 0.62 1.5
1,551,647 - 13382 mRNA_5014 0.63 -1.0
1,551,713 + 13382 mRNA_5014 0.64 -0.6
1,551,813 + 13382 mRNA_5014 0.67 0.9
1,552,174 - 13382 mRNA_5014 0.76 0.6
1,552,202 + 13382 mRNA_5014 0.77 -2.8
1,552,350 - 13382 mRNA_5014 0.81 0.8
1,552,416 - 13382 mRNA_5014 0.83 -0.6
1,552,523 + 13382 mRNA_5014 0.85 0.7
1,552,690 + 13382 mRNA_5014 0.90 2.4
1,552,763 - 0.7
1,552,839 - 2.1
1,552,845 + 1.1
1,552,985 - 2.3
1,553,003 + 1.0
1,553,084 - -1.3
1,553,108 + 0.1
1,553,249 + -0.6
1,553,273 + 0.1
1,553,283 - 0.5
1,553,285 + -0.3
1,553,287 + 0.6
1,553,290 - 2.4
1,553,292 - -0.1
1,553,293 - -1.0
1,553,294 + -0.4
1,553,298 + -0.4
1,553,298 + 1.2
1,553,301 - 0.5
1,553,303 - 1.2
1,553,306 + 1.3
1,553,310 + -2.2
1,553,311 + 0.5
1,553,313 + 1.1
1,553,313 - -0.5
1,553,316 - 1.6
1,553,318 - -0.6
1,553,323 + 1.4
1,553,336 + 0.9
1,553,344 + 2.7
1,553,364 - 0.4
1,553,371 + 0.5
1,553,383 - 1.5
1,553,384 + -0.4
1,553,394 + 0.4
1,553,396 - -0.7
1,553,403 + 1.0
1,553,413 + 0.8
1,553,416 - -0.8
1,553,417 + 0.5
1,553,426 - 0.3
1,553,427 + 0.2
1,553,428 - 0.5
1,553,437 + -0.0
1,553,445 + 0.0
1,553,445 + -0.1
1,553,448 + 1.6
1,553,451 + 0.8
1,553,451 - 1.0
1,553,460 + 2.8
1,553,484 + 1.5
1,553,485 - -1.0
1,553,485 - 1.0
1,553,491 - 0.0
1,553,602 - 1.2
1,553,603 + -0.6
1,553,606 - 0.2
1,553,719 + 13383 mRNA_5015 0.11 1.3
1,553,758 + 13383 mRNA_5015 0.14 0.8
1,553,772 + 13383 mRNA_5015 0.15 0.1
1,553,869 + 13383 mRNA_5015 0.21 -1.1