Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5008

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5008: 13376 - KOG2319 Vacuolar assembly/sorting protein VPS9, at 1530347 to 1531248 13376 mRNA_5009: 13377 - K07195 EXOC7, EXO70 exocyst complex component 7, at 1531296 to 1533936 13377

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,529,629 + 0.4
1,529,801 - -0.7
1,529,810 + -0.5
1,529,876 - -0.2
1,529,925 - 0.1
1,529,950 + -0.1
1,529,956 + 0.7
1,529,957 - -0.1
1,529,958 - -0.4
1,529,961 - 0.3
1,529,961 + 0.8
1,529,963 + 0.5
1,529,967 - -0.0
1,529,971 + 1.8
1,529,976 - 0.7
1,529,978 - 0.1
1,529,980 - -0.8
1,529,983 + 1.0
1,529,993 + -0.5
1,530,005 - -1.0
1,530,089 + 2.0
1,530,095 - -0.1
1,530,096 - 3.0
1,530,102 - -0.0
1,530,103 + 3.9
1,530,107 + 1.4
1,530,126 + 0.9
1,530,159 - 2.0
1,530,161 - 1.6
1,530,168 - 0.8
1,530,169 - 3.0
1,530,170 - 0.6
1,530,188 + 1.9
1,530,300 - 0.8
1,530,306 + 1.2
1,530,446 - 13376 mRNA_5008 0.11 -0.2
1,530,585 - 13376 mRNA_5008 0.26 0.2
1,530,603 + 13376 mRNA_5008 0.28 0.8
1,531,028 + 13376 mRNA_5008 0.75 1.6
1,531,043 + 13376 mRNA_5008 0.77 0.2
1,531,050 + 13376 mRNA_5008 0.78 -1.4
1,531,176 - 0.2
1,531,455 - 0.3
1,531,459 - 0.3
1,532,062 - 13377 mRNA_5009 0.29 -0.2
1,532,174 - 13377 mRNA_5009 0.33 0.3
1,532,185 + 13377 mRNA_5009 0.34 1.6
1,532,191 - 13377 mRNA_5009 0.34 -1.3
1,532,219 - 13377 mRNA_5009 0.35 0.3