Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4935

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4934: 13302 - K00611 OTC, argF, argI ornithine carbamoyltransferase, at 1354445 to 1355871 13302 mRNA_4935: 13303 - BLAST salivary gland secretion 1 [Moniliophthora roreri..., at 1356416 to 1359547 13303 mRNA_4936: 13304 - HMMPfam-MFS_1 like family-PF12832, at 1359714 to 1362398 13304

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,355,424 - 13302 mRNA_4934 0.69 0.8
1,355,753 + -0.1
1,355,904 - 0.2
1,355,978 + 2.1
1,356,326 - -0.0
1,356,338 - -0.8
1,356,355 + 0.2
1,357,245 - 13303 mRNA_4935 0.26 1.4
1,357,392 + 13303 mRNA_4935 0.31 0.7
1,357,518 - 13303 mRNA_4935 0.35 -0.3
1,357,632 - 13303 mRNA_4935 0.39 1.7
1,357,768 + 13303 mRNA_4935 0.43 0.7
1,357,771 - 13303 mRNA_4935 0.43 -0.4
1,357,779 - 13303 mRNA_4935 0.44 0.4
1,358,066 + 13303 mRNA_4935 0.53 -0.3
1,358,247 - 13303 mRNA_4935 0.58 -1.1
1,358,248 + 13303 mRNA_4935 0.58 0.4
1,358,366 + 13303 mRNA_4935 0.62 1.1
1,358,381 + 13303 mRNA_4935 0.63 -0.9
1,359,138 - 13303 mRNA_4935 0.87 2.6
1,359,182 - 13303 mRNA_4935 0.88 -0.5
1,359,374 - 0.6
1,359,392 + -0.8
1,359,692 - 0.2
1,359,806 - -0.3
1,359,843 + 0.1
1,359,882 - -1.1
1,359,926 - -0.3
1,359,957 + 1.8
1,360,255 - 13304 mRNA_4936 0.20 0.9
1,360,387 + 13304 mRNA_4936 0.25 1.9