Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4933

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4932: 13300 - K11547 NDC80, HEC1, TID3 kinetochore protein NDC80, at 1346785 to 1349520 13300 mRNA_4933: 13301 - K14972 PAXIP1, PTIP PAX-interacting protein 1, at 1349859 to 1354237 13301 mRNA_4934: 13302 - K00611 OTC, argF, argI ornithine carbamoyltransferase, at 1354445 to 1355871 13302

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,349,714 + 1.0
1,349,862 - 0.2
1,349,896 + 0.0
1,350,031 - 0.1
1,350,144 - -0.3
1,350,160 - 1.0
1,350,178 + -1.2
1,350,197 - 1.3
1,350,204 + 0.0
1,350,314 - 13301 mRNA_4933 0.10 -0.3
1,350,462 - 13301 mRNA_4933 0.14 -0.0
1,350,475 - 13301 mRNA_4933 0.14 0.2
1,350,618 + 13301 mRNA_4933 0.17 -1.9
1,350,703 + 13301 mRNA_4933 0.19 -1.5
1,350,931 - 13301 mRNA_4933 0.24 -0.2
1,351,249 + 13301 mRNA_4933 0.32 -1.0
1,351,322 + 13301 mRNA_4933 0.33 -2.0
1,351,406 - 13301 mRNA_4933 0.35 1.4
1,351,764 - 13301 mRNA_4933 0.44 0.2
1,352,032 - 13301 mRNA_4933 0.50 0.7
1,352,389 + 13301 mRNA_4933 0.58 0.3
1,352,570 + 13301 mRNA_4933 0.62 1.1
1,352,656 - 13301 mRNA_4933 0.64 1.4
1,352,762 + 13301 mRNA_4933 0.66 -0.5
1,352,944 + 13301 mRNA_4933 0.70 2.4
1,353,541 - 13301 mRNA_4933 0.84 0.4
1,353,661 + 13301 mRNA_4933 0.87 -2.5
1,354,222 - 0.3
1,354,357 + -0.3
1,354,386 - 2.7
1,354,389 - -0.2
1,354,389 - 0.8
1,354,395 + -0.5
1,354,396 + -0.1
1,354,403 - 2.1
1,354,407 - 0.4
1,354,417 - -1.4
1,354,435 - 0.1
1,354,571 + -1.0
1,354,702 - 13302 mRNA_4934 0.18 -0.2
1,354,714 + 13302 mRNA_4934 0.19 0.9
1,355,019 + 13302 mRNA_4934 0.40 2.2
1,355,136 + 13302 mRNA_4934 0.48 -0.2