Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4926

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4925: 13293 - ProSiteProfiles-WW/rsp5/WWP domain profile.-PS50020,SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 1324848 to 1328229 13293 mRNA_4926: 13294 - ProSiteProfiles-Chromo and chromo shadow domain profile.-PS50013, at 1328317 to 1334558 13294 mRNA_4927: 13295 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 1334760 to 1336928 13295

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,328,381 + -1.9
1,328,395 + -0.6
1,328,446 + -0.9
1,328,474 - 0.3
1,328,474 - 1.1
1,328,606 - 0.3
1,328,700 - 0.0
1,328,750 - -0.6
1,328,752 - 2.4
1,328,772 + 1.3
1,328,773 + 1.6
1,328,806 + 1.7
1,328,810 + 2.0
1,328,811 - 0.4
1,328,847 + -0.9
1,328,851 - -1.5
1,328,900 + -0.7
1,328,922 + -1.5
1,328,927 + 0.4
1,328,960 - 13294 mRNA_4926 0.10 -0.9
1,328,973 - 13294 mRNA_4926 0.11 1.5
1,328,988 + 13294 mRNA_4926 0.11 -1.1
1,329,029 - 13294 mRNA_4926 0.11 1.9
1,329,049 - 13294 mRNA_4926 0.12 0.9
1,329,056 + 13294 mRNA_4926 0.12 0.7
1,329,062 + 13294 mRNA_4926 0.12 -0.0
1,329,070 - 13294 mRNA_4926 0.12 -1.3
1,329,074 - 13294 mRNA_4926 0.12 -0.6
1,329,093 + 13294 mRNA_4926 0.12 0.3
1,329,095 + 13294 mRNA_4926 0.12 4.0
1,329,143 - 13294 mRNA_4926 0.13 -0.5
1,329,371 - 13294 mRNA_4926 0.17 1.5
1,329,476 - 13294 mRNA_4926 0.19 -2.3
1,329,518 - 13294 mRNA_4926 0.19 0.4
1,329,532 + 13294 mRNA_4926 0.19 1.2
1,329,566 + 13294 mRNA_4926 0.20 1.4
1,329,643 + 13294 mRNA_4926 0.21 2.0
1,329,658 + 13294 mRNA_4926 0.21 1.3
1,329,667 - 13294 mRNA_4926 0.22 -0.0
1,329,837 - 13294 mRNA_4926 0.24 -0.0
1,329,876 + 13294 mRNA_4926 0.25 0.2
1,329,959 + 13294 mRNA_4926 0.26 0.7
1,329,959 + 13294 mRNA_4926 0.26 -0.1
1,330,025 + 13294 mRNA_4926 0.27 1.2
1,330,143 - 13294 mRNA_4926 0.29 -0.0
1,330,409 - 13294 mRNA_4926 0.34 1.5
1,332,479 + 13294 mRNA_4926 0.67 0.9
1,332,653 + 13294 mRNA_4926 0.69 -0.2
1,333,640 + 13294 mRNA_4926 0.85 0.2
1,334,352 + 0.6
1,334,490 - 2.4
1,334,496 + 0.9
1,334,502 + -0.5
1,334,509 - -2.6
1,334,510 - -1.8
1,334,510 + 0.8
1,334,516 - 0.9
1,334,517 - -0.9
1,334,519 + 0.8
1,334,519 - 2.4
1,334,522 + -2.0
1,334,524 + -0.8
1,334,526 + -1.7
1,334,528 + 1.6
1,334,584 - 2.4
1,334,694 - -0.5
1,334,699 + 1.5
1,334,703 + 0.3
1,334,705 + 1.4
1,334,719 + -1.1
1,334,766 - -1.0
1,334,833 - 1.6
1,334,865 - 1.6
1,334,867 - -0.6
1,334,879 + 0.1
1,334,881 - -0.6
1,334,892 - 1.0
1,334,948 - 0.3
1,335,010 - 13295 mRNA_4927 0.12 1.9
1,335,161 - 13295 mRNA_4927 0.18 1.8
1,335,311 + 13295 mRNA_4927 0.25 2.5