Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4919

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4918: 13286 - K00327 POR NADPH-ferrihemoprotein reductase, at 1301250 to 1303860 13286 mRNA_4919: 13287 - K01768 E4.6.1.1 adenylate cyclase, at 1304232 to 1310691 13287 mRNA_4920: 13288 - K01807 rpiA ribose 5-phosphate isomerase A, at 1311441 to 1312877 13288

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,303,917 - -0.4
1,303,919 + 0.9
1,303,932 - 0.7
1,303,935 - 0.4
1,303,936 + -0.4
1,303,936 + 1.1
1,303,936 - 0.0
1,303,938 - 0.4
1,303,952 - 0.2
1,303,954 - 1.4
1,303,954 - -0.4
1,303,957 - 0.9
1,303,964 + 0.2
1,303,969 + -0.9
1,303,970 + 1.0
1,303,971 - 0.2
1,303,971 + -0.2
1,303,981 + 1.3
1,303,988 - -0.8
1,304,108 + 0.5
1,304,115 + 0.8
1,304,117 + -0.8
1,304,208 + 1.3
1,304,407 - -0.1
1,304,561 + 1.0
1,305,009 + 13287 mRNA_4919 0.12 -0.9
1,305,823 - 13287 mRNA_4919 0.25 3.3
1,305,981 - 13287 mRNA_4919 0.27 2.5
1,306,055 - 13287 mRNA_4919 0.28 0.5
1,306,215 - 13287 mRNA_4919 0.31 1.3
1,306,318 - 13287 mRNA_4919 0.32 -0.5
1,306,630 - 13287 mRNA_4919 0.37 0.1
1,306,915 + 13287 mRNA_4919 0.42 -0.3
1,306,992 - 13287 mRNA_4919 0.43 0.5
1,307,048 - 13287 mRNA_4919 0.44 -0.8
1,307,066 + 13287 mRNA_4919 0.44 0.4
1,307,663 + 13287 mRNA_4919 0.53 -0.3
1,307,691 + 13287 mRNA_4919 0.54 1.3
1,307,740 + 13287 mRNA_4919 0.54 0.9
1,307,820 - 13287 mRNA_4919 0.56 1.5
1,308,112 + 13287 mRNA_4919 0.60 0.4
1,308,189 + 13287 mRNA_4919 0.61 -0.6
1,308,521 + 13287 mRNA_4919 0.66 0.5
1,308,769 + 13287 mRNA_4919 0.70 0.3
1,308,901 - 13287 mRNA_4919 0.72 0.4
1,308,957 + 13287 mRNA_4919 0.73 -1.7
1,308,961 - 13287 mRNA_4919 0.73 0.6
1,309,252 - 13287 mRNA_4919 0.78 1.9
1,309,528 - 13287 mRNA_4919 0.82 -2.0
1,309,745 - 13287 mRNA_4919 0.85 0.0
1,309,823 - 13287 mRNA_4919 0.87 2.6
1,309,844 - 13287 mRNA_4919 0.87 1.1
1,310,167 - -0.1
1,310,422 - -0.7
1,310,462 + 2.9
1,310,557 - -0.3
1,310,726 - -0.1
1,310,733 - -0.3
1,310,735 - -0.7
1,310,747 - -0.3
1,310,750 - 0.1
1,310,876 + 0.0
1,310,882 - -0.8
1,310,884 + -0.5
1,311,007 + 0.6
1,311,028 + 1.3
1,311,045 - -2.1
1,311,049 + 0.1
1,311,167 + 3.6
1,311,268 - -0.1
1,311,293 - -1.2
1,311,307 - 3.5
1,311,310 - 1.1
1,311,319 - 1.3
1,311,323 + 1.0