Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4912

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4911: 13279 - BLAST pre-mrna-splicing factor cwc22 [Moniliophthora ro..., at 1288302 to 1289594 13279 mRNA_4912: 13280 - KOG3309 Ferredoxin, at 1289654 to 1291365 13280 mRNA_4913: 13281 - HMMPfam-Spermine/spermidine synthase-PF01564,ProSiteProfiles-Polyamine biosynthesis (PABS) domain profile.-PS51006,SUPERFAMILY--SSF53335, at 1291669 to 1293879 13281

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,288,669 + 13279 mRNA_4911 0.28 1.9
1,288,810 - 13279 mRNA_4911 0.39 1.3
1,289,083 + 13279 mRNA_4911 0.60 -0.4
1,289,095 + 13279 mRNA_4911 0.61 2.1
1,289,546 - -1.4
1,289,694 - -0.6
1,289,716 - -0.2
1,289,951 + 13280 mRNA_4912 0.17 -0.9
1,290,253 + 13280 mRNA_4912 0.35 -0.1
1,290,929 + 13280 mRNA_4912 0.74 -0.3
1,291,298 + 1.7
1,291,408 - 1.5
1,291,573 - -0.5
1,291,605 + 1.5
1,291,613 + -0.3
1,291,714 - -0.0
1,291,731 - -0.2
1,291,744 - -0.6
1,291,746 + -0.3
1,291,752 - 1.9
1,291,753 - -1.5
1,291,760 - 0.1
1,291,765 + 0.4
1,292,036 - 13281 mRNA_4913 0.17 -0.0
1,292,054 - 13281 mRNA_4913 0.17 0.3
1,292,214 + 13281 mRNA_4913 0.25 0.7