Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4908

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4906: 13274 - K03540 RPR2, RPP21 ribonuclease P protein subunit RPR2, at 1273469 to 1274303 13274 mRNA_4907: 13275 - HMMPfam-Cytochrome c oxidase subunit VIIc-PF02935,SUPERFAMILY--SSF81427, at 1274592 to 1274946 13275 mRNA_4908: 13276 - K15163 SRB8, MED12 mediator of RNA polymerase II transcription subunit 12, fungi type, at 1275228 to 1281484 13276 mRNA_4909: 13277 - KOG1339 Aspartyl protease, at 1281980 to 1284451 13277

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,274,371 + 1.5
1,274,392 + -0.1
1,274,521 + -0.2
1,274,525 + 0.5
1,274,853 + 13275 mRNA_4907 0.74 0.9
1,275,160 + 2.6
1,275,421 + 0.9
1,275,721 + 1.8
1,275,835 - -0.2
1,276,019 - 13276 mRNA_4908 0.13 -0.4
1,276,316 - 13276 mRNA_4908 0.17 -0.3
1,276,838 + 13276 mRNA_4908 0.26 -2.1
1,276,892 + 13276 mRNA_4908 0.27 -0.3
1,276,898 + 13276 mRNA_4908 0.27 1.8
1,277,235 - 13276 mRNA_4908 0.32 -0.3
1,277,471 + 13276 mRNA_4908 0.36 1.3
1,277,596 - 13276 mRNA_4908 0.38 0.2
1,277,609 - 13276 mRNA_4908 0.38 -0.0
1,278,066 + 13276 mRNA_4908 0.45 0.6
1,278,360 - 13276 mRNA_4908 0.50 0.9
1,278,636 - 13276 mRNA_4908 0.54 0.1
1,278,801 + 13276 mRNA_4908 0.57 0.7
1,278,826 - 13276 mRNA_4908 0.58 -0.7
1,279,060 - 13276 mRNA_4908 0.61 1.7
1,279,521 + 13276 mRNA_4908 0.69 0.3
1,279,555 - 13276 mRNA_4908 0.69 0.1
1,279,576 + 13276 mRNA_4908 0.69 2.7
1,279,659 - 13276 mRNA_4908 0.71 -1.4
1,279,660 - 13276 mRNA_4908 0.71 1.5
1,279,849 - 13276 mRNA_4908 0.74 1.9
1,279,867 + 13276 mRNA_4908 0.74 1.3
1,279,950 + 13276 mRNA_4908 0.75 -0.0
1,279,955 - 13276 mRNA_4908 0.76 0.0
1,279,963 + 13276 mRNA_4908 0.76 1.4
1,280,240 + 13276 mRNA_4908 0.80 -0.3
1,280,392 - 13276 mRNA_4908 0.83 -0.1
1,280,436 - 13276 mRNA_4908 0.83 0.6
1,280,517 - 13276 mRNA_4908 0.85 2.6
1,280,538 - 13276 mRNA_4908 0.85 -0.7
1,280,681 + 13276 mRNA_4908 0.87 0.5
1,280,997 - 0.5
1,281,121 - -0.1
1,281,136 + 1.2
1,281,264 - 2.7
1,281,276 + -0.4
1,281,531 + 0.5
1,281,532 - 2.3
1,281,541 - 0.7
1,281,543 - 1.2
1,281,545 - 0.1
1,281,554 + -2.0
1,281,555 - -0.5
1,281,560 - 1.4
1,281,702 - 0.1
1,281,707 - 2.2
1,281,712 + -0.4
1,281,714 - -0.4
1,281,714 - -0.0
1,281,716 + 0.5
1,281,717 + 2.3
1,281,718 + -0.5
1,281,758 - 1.9
1,281,758 - -0.1
1,281,760 - 0.6
1,281,760 + 3.9
1,281,760 + -2.3
1,281,765 - 1.1
1,281,773 - -0.4
1,281,779 + 0.3
1,281,789 + 2.2
1,281,795 + 2.1
1,281,890 - 0.1
1,282,041 - 0.3
1,282,045 - 0.8
1,282,049 + 0.7
1,282,049 - 0.6
1,282,051 + 0.3
1,282,160 - -0.0
1,282,194 - -1.4
1,282,201 - 0.0
1,282,204 + -0.5
1,282,205 - 1.8
1,282,339 - 13277 mRNA_4909 0.15 -0.5
1,282,352 - 13277 mRNA_4909 0.15 0.1
1,282,370 + 13277 mRNA_4909 0.16 -0.2