Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4899

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4898: 13266 - HMMPfam-TAP-like protein-PF08386,SUPERFAMILY--SSF53474, at 1253666 to 1256190 13266 mRNA_4899: 13267 - KOG4705 Uncharacterized conserved protein, at 1256310 to 1257849 13267 mRNA_4900: 13268 - HMMPfam-NADH-ubiquinone oxidoreductase B12 subunit family-PF08122, at 1258354 to 1258880 13268

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,255,407 - 13266 mRNA_4898 0.69 -0.5
1,255,518 - 13266 mRNA_4898 0.73 1.1
1,255,554 + 13266 mRNA_4898 0.75 1.3
1,255,590 - 13266 mRNA_4898 0.76 0.8
1,255,657 + 13266 mRNA_4898 0.79 2.2
1,255,685 - 13266 mRNA_4898 0.80 0.7
1,255,696 - 13266 mRNA_4898 0.80 1.2
1,255,701 + 13266 mRNA_4898 0.81 -0.2
1,255,824 + 13266 mRNA_4898 0.85 2.0
1,255,839 - 13266 mRNA_4898 0.86 0.3
1,256,158 + 1.5
1,256,426 + 0.4
1,257,312 - 13267 mRNA_4899 0.65 0.3
1,257,435 - 13267 mRNA_4899 0.73 -2.2
1,257,582 - 13267 mRNA_4899 0.83 0.5
1,257,584 + 13267 mRNA_4899 0.83 1.5
1,257,730 - -1.9
1,257,861 - 1.0
1,257,874 - 3.0
1,257,880 - 2.1
1,257,881 - -0.0
1,257,888 + -0.7
1,257,894 - -0.4
1,257,899 - 0.3
1,257,899 - -0.6
1,257,902 + 1.8
1,257,902 + 1.6
1,257,902 + -1.1
1,257,904 - 1.0
1,258,203 - 0.3
1,258,208 + 0.1
1,258,215 - -0.8
1,258,219 - -0.6
1,258,234 + 0.3
1,258,328 + -1.1