Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4815

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4814: 13182 - HMMPfam-SnoaL-like domain-PF13577,SUPERFAMILY--SSF54427, at 1074739 to 1075935 13182 mRNA_4815: 13183 - SUPERFAMILY--SSF143575, at 1075987 to 1081197 13183 mRNA_4816: 13184 - Interpro Protein of unknown function (DUF1777), at 1081672 to 1082583 13184

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,074,993 - 13182 mRNA_4814 0.21 1.9
1,075,091 - 13182 mRNA_4814 0.29 -0.8
1,075,115 - 13182 mRNA_4814 0.31 0.8
1,075,118 + 13182 mRNA_4814 0.32 1.3
1,075,350 + 13182 mRNA_4814 0.51 0.4
1,075,520 + 13182 mRNA_4814 0.65 -0.7
1,075,522 + 13182 mRNA_4814 0.65 -1.0
1,075,819 - 0.1
1,076,023 + 0.2
1,076,055 - 0.5
1,076,130 + 0.1
1,076,356 - -0.5
1,076,483 + -0.8
1,076,675 + 13183 mRNA_4815 0.13 1.3
1,076,804 + 13183 mRNA_4815 0.16 -1.7
1,076,827 - 13183 mRNA_4815 0.16 1.1
1,076,901 + 13183 mRNA_4815 0.18 -1.0
1,076,939 - 13183 mRNA_4815 0.18 2.3
1,077,249 - 13183 mRNA_4815 0.24 0.4
1,077,275 - 13183 mRNA_4815 0.25 -0.9
1,077,362 - 13183 mRNA_4815 0.26 -0.8
1,077,405 - 13183 mRNA_4815 0.27 0.3
1,077,557 + 13183 mRNA_4815 0.30 0.1
1,078,207 - 13183 mRNA_4815 0.43 1.9
1,078,387 - 13183 mRNA_4815 0.46 0.0
1,078,393 - 13183 mRNA_4815 0.46 1.0
1,078,445 + 13183 mRNA_4815 0.47 -0.4
1,078,465 - 13183 mRNA_4815 0.48 -0.1
1,078,639 + 13183 mRNA_4815 0.51 -1.7
1,078,692 - 13183 mRNA_4815 0.52 -0.2
1,078,730 + 13183 mRNA_4815 0.53 1.7
1,078,739 + 13183 mRNA_4815 0.53 0.1
1,079,062 + 13183 mRNA_4815 0.59 -0.6
1,079,122 - 13183 mRNA_4815 0.60 0.1
1,079,302 + 13183 mRNA_4815 0.64 0.9
1,079,567 + 13183 mRNA_4815 0.69 0.2
1,079,599 - 13183 mRNA_4815 0.69 1.5
1,079,840 + 13183 mRNA_4815 0.74 -0.3
1,080,279 - 13183 mRNA_4815 0.82 1.3
1,080,297 + 13183 mRNA_4815 0.83 -0.6
1,080,313 - 13183 mRNA_4815 0.83 -0.9
1,080,326 - 13183 mRNA_4815 0.83 0.4
1,080,327 + 13183 mRNA_4815 0.83 -0.5
1,080,335 + 13183 mRNA_4815 0.83 -2.3
1,080,361 - 13183 mRNA_4815 0.84 -0.4
1,080,599 - 13183 mRNA_4815 0.89 0.9
1,080,756 - -1.1
1,080,907 + -0.5
1,080,923 + -0.8
1,081,064 - -0.2
1,081,084 - 0.1
1,081,106 - -0.3
1,081,181 - 1.0
1,081,208 + -0.3
1,081,234 + 2.5
1,081,359 - 0.4
1,081,360 + -1.3
1,081,367 + 2.2