Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4805

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4804: 13172 - HMMPfam-PAP2 superfamily-PF01569, at 1052365 to 1054205 13172 mRNA_4805: 13173 - ProSiteProfiles-BTB domain profile.-PS50097, at 1055118 to 1056196 13173

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,054,121 + -0.1
1,054,128 + 0.6
1,054,142 + 0.5
1,054,243 + 0.7
1,054,251 + -0.7
1,054,253 + -2.4
1,054,258 - 1.9
1,054,258 - -0.2
1,054,261 + 1.3
1,054,263 - 1.4
1,054,269 - 0.0
1,054,277 + 0.4
1,054,283 + 1.0
1,054,413 + -0.0
1,054,414 + 1.9
1,054,423 - 0.5
1,054,426 - 2.7
1,054,440 + 0.1
1,054,556 - -1.2
1,054,575 - 1.3
1,054,703 - 1.1
1,054,717 + -0.0
1,054,719 + 4.1
1,054,722 - -1.3
1,054,724 + 0.4
1,054,728 - 0.1
1,054,741 - -0.4
1,054,743 - 1.6
1,054,778 - 0.8
1,054,786 - 1.3
1,054,788 + -0.3
1,054,877 - 0.4
1,054,913 - 0.9
1,054,922 + -0.7
1,055,328 - 13173 mRNA_4805 0.19 -1.1
1,055,618 + 13173 mRNA_4805 0.46 1.3
1,055,786 - 13173 mRNA_4805 0.62 2.3
1,055,903 + 13173 mRNA_4805 0.73 3.1
1,055,905 + 13173 mRNA_4805 0.73 1.3
1,056,177 - -0.7
1,056,348 + -1.7
1,056,491 + 2.6
1,056,638 - 1.0
1,056,787 + -0.1
1,056,797 + -0.7
1,056,803 + 0.1
1,056,901 - 0.2
1,057,067 + 0.2
1,057,089 + 1.2
1,057,100 - 0.3
1,057,113 - 0.2