Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4780

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4779: 13147 - Hypothetical Protein, at 995491 to 996923 13147 mRNA_4780: 13148 - SUPERFAMILY--SSF52047, at 997271 to 1001046 13148 mRNA_4781: 13149 - Hypothetical Protein, at 1001431 to 1001991 13149 mRNA_4782: 13150 - Hypothetical Protein, at 1002012 to 1003066 13150

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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996,921 + -0.3
997,187 + 1.7
997,516 + 0.7
997,828 - 13148 mRNA_4780 0.15 1.7
998,056 - 13148 mRNA_4780 0.21 -0.1
998,207 + 13148 mRNA_4780 0.25 1.0
998,213 + 13148 mRNA_4780 0.25 0.1
998,622 - 13148 mRNA_4780 0.36 1.2
998,648 - 13148 mRNA_4780 0.36 0.9
998,660 - 13148 mRNA_4780 0.37 1.8
998,661 - 13148 mRNA_4780 0.37 0.4
998,666 - 13148 mRNA_4780 0.37 0.7
998,796 + 13148 mRNA_4780 0.40 0.6
998,797 + 13148 mRNA_4780 0.40 -0.7
998,813 - 13148 mRNA_4780 0.41 2.1
998,819 - 13148 mRNA_4780 0.41 -0.7
999,102 + 13148 mRNA_4780 0.48 0.7
999,238 - 13148 mRNA_4780 0.52 0.5
999,404 - 13148 mRNA_4780 0.56 -0.3
999,678 - 13148 mRNA_4780 0.64 -0.8
999,734 - 13148 mRNA_4780 0.65 -0.2
999,866 - 13148 mRNA_4780 0.69 0.0
999,867 + 13148 mRNA_4780 0.69 -1.9
999,992 + 13148 mRNA_4780 0.72 -0.1
1,000,048 + 13148 mRNA_4780 0.74 2.3
1,000,146 + 13148 mRNA_4780 0.76 -0.2
1,000,443 + 13148 mRNA_4780 0.84 1.4
1,000,570 + 13148 mRNA_4780 0.87 -0.7
1,000,628 - 13148 mRNA_4780 0.89 0.2
1,000,682 + 0.7
1,000,700 - 1.0
1,000,735 + -0.4
1,000,871 - 0.5
1,000,887 + -1.8
1,000,936 + -1.1
1,000,948 - 1.7
1,000,993 - 0.2
1,001,019 - 3.4
1,001,021 - -0.9
1,001,028 + -0.4
1,001,057 - 1.0
1,001,059 + -1.0
1,001,099 + 0.2
1,001,175 + -1.7
1,001,214 - 2.0
1,001,218 - -0.7
1,001,225 - -0.4
1,001,351 + 0.2
1,001,360 - -0.4
1,001,366 - 0.0
1,001,366 - 1.5
1,001,367 - 0.3
1,001,383 - 1.4