Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4768

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4767: 13135 - KOG1263 Multicopper oxidases, at 963483 to 966203 13135 mRNA_4768: 13136 - Hypothetical Protein, at 966490 to 969299 13136 mRNA_4769: 13137 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 969625 to 971504 13137

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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965,520 + 13135 mRNA_4767 0.75 0.1
965,595 - 13135 mRNA_4767 0.78 1.0
965,611 - 13135 mRNA_4767 0.78 0.3
965,660 + 13135 mRNA_4767 0.80 2.5
965,667 - 13135 mRNA_4767 0.80 2.4
965,667 + 13135 mRNA_4767 0.80 0.1
965,672 + 13135 mRNA_4767 0.80 1.0
965,785 - 13135 mRNA_4767 0.85 -0.3
965,799 - 13135 mRNA_4767 0.85 1.5
965,800 - 13135 mRNA_4767 0.85 -0.7
965,959 + -0.6
966,111 + -0.6
966,126 + 0.1
966,150 + 1.3
966,190 + 1.4
966,243 - 4.8
966,282 - 0.1
966,296 + 0.4
966,443 + -0.1
966,535 - 0.2
966,540 + 0.4
966,863 - 13136 mRNA_4768 0.13 0.6
967,112 + 13136 mRNA_4768 0.22 0.2
967,121 + 13136 mRNA_4768 0.22 -0.3
967,121 + 13136 mRNA_4768 0.22 -0.1
967,219 + 13136 mRNA_4768 0.26 0.2
967,396 - 13136 mRNA_4768 0.32 -0.3
967,598 - 13136 mRNA_4768 0.39 1.2
967,614 - 13136 mRNA_4768 0.40 -0.7
967,633 + 13136 mRNA_4768 0.41 0.3
967,636 + 13136 mRNA_4768 0.41 0.2
967,675 - 13136 mRNA_4768 0.42 1.9
967,737 + 13136 mRNA_4768 0.44 0.1
967,959 - 13136 mRNA_4768 0.52 1.4
967,966 - 13136 mRNA_4768 0.53 2.7
967,971 - 13136 mRNA_4768 0.53 -0.1
968,098 - 13136 mRNA_4768 0.57 -0.2
968,103 - 13136 mRNA_4768 0.57 -1.0
968,103 + 13136 mRNA_4768 0.57 -0.1
968,103 - 13136 mRNA_4768 0.57 1.5
968,109 - 13136 mRNA_4768 0.58 0.4
968,115 - 13136 mRNA_4768 0.58 -1.5
968,115 - 13136 mRNA_4768 0.58 -0.0
968,129 - 13136 mRNA_4768 0.58 -0.7
968,135 - 13136 mRNA_4768 0.59 -1.1
968,152 + 13136 mRNA_4768 0.59 -0.0
968,154 + 13136 mRNA_4768 0.59 2.8
968,193 - 13136 mRNA_4768 0.61 -1.6
968,193 + 13136 mRNA_4768 0.61 -0.4
968,231 - 13136 mRNA_4768 0.62 -0.3
968,280 + 13136 mRNA_4768 0.64 1.8
968,281 - 13136 mRNA_4768 0.64 -0.5
968,445 - 13136 mRNA_4768 0.70 2.0
968,580 - 13136 mRNA_4768 0.74 -0.5
968,603 + 13136 mRNA_4768 0.75 0.3
968,612 - 13136 mRNA_4768 0.76 0.2
968,732 + 13136 mRNA_4768 0.80 1.6
968,860 + 13136 mRNA_4768 0.84 2.4
968,872 - 13136 mRNA_4768 0.85 -0.2
969,046 - -0.3
969,154 + 1.1
969,160 - -0.8
969,428 - 2.6
969,437 + 1.3
969,447 - 0.4
969,524 + -0.6
969,635 - -1.2