Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4760

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4759: 13127 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 940381 to 941157 13127 mRNA_4760: 13128 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 941332 to 944070 13128 mRNA_4761: 13129 - K02735 PSMB3 20S proteasome subunit beta 3, at 944386 to 945694 13129

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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940,648 + 13127 mRNA_4759 0.34 -0.6
940,692 - 13127 mRNA_4759 0.40 0.3
940,762 - 13127 mRNA_4759 0.49 1.0
940,983 - 13127 mRNA_4759 0.77 0.7
941,157 + 0.3
941,390 - 2.6
941,391 + 0.8
941,396 + 3.9
941,609 + 13128 mRNA_4760 0.10 -0.4
941,736 + 13128 mRNA_4760 0.15 0.4
941,785 + 13128 mRNA_4760 0.17 -0.1
942,025 - 13128 mRNA_4760 0.25 0.9
942,032 + 13128 mRNA_4760 0.26 2.9
942,241 + 13128 mRNA_4760 0.33 -0.1
942,308 + 13128 mRNA_4760 0.36 0.0
942,354 - 13128 mRNA_4760 0.37 -0.2
942,358 + 13128 mRNA_4760 0.37 0.1
943,038 + 13128 mRNA_4760 0.62 0.3
943,130 + 13128 mRNA_4760 0.66 1.4
943,292 - 13128 mRNA_4760 0.72 1.0
943,519 - 13128 mRNA_4760 0.80 -0.7
943,828 + 1.6
943,971 + 1.1
944,076 - -1.6
944,157 - 1.6
944,246 + -0.7
944,250 - -1.5
944,263 - 0.4
944,268 + 1.2
944,279 + 1.0
944,415 - 1.9
945,019 - 13129 mRNA_4761 0.48 0.4