Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4753

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922993 to 927297 13120 mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927583 to 931061 13121 mRNA_4754: 13122 - ProSiteProfiles-F-box domain profile.-PS50181, at 931606 to 933249 13122

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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926,672 - 13120 mRNA_4752 0.85 1.2
926,822 + 13120 mRNA_4752 0.89 0.7
926,841 + 13120 mRNA_4752 0.89 0.9
926,930 - 1.3
926,936 - 0.3
927,146 + -0.4
927,225 - -0.6
927,384 - -0.0
927,687 + -0.6
928,093 + 13121 mRNA_4753 0.15 1.6
928,145 - 13121 mRNA_4753 0.16 1.9
928,208 - 13121 mRNA_4753 0.18 0.8
928,215 + 13121 mRNA_4753 0.18 -2.5
928,365 - 13121 mRNA_4753 0.22 -0.0
928,367 + 13121 mRNA_4753 0.23 0.4
928,725 + 13121 mRNA_4753 0.33 1.8
928,810 - 13121 mRNA_4753 0.35 -0.1
928,834 - 13121 mRNA_4753 0.36 0.6
928,937 - 13121 mRNA_4753 0.39 1.9
928,963 - 13121 mRNA_4753 0.40 -0.5
929,143 + 13121 mRNA_4753 0.45 1.9
929,262 - 13121 mRNA_4753 0.48 0.0
929,577 - 13121 mRNA_4753 0.57 4.0
929,821 - 13121 mRNA_4753 0.64 -0.1
929,827 + 13121 mRNA_4753 0.65 -0.1
929,830 - 13121 mRNA_4753 0.65 0.8
929,841 + 13121 mRNA_4753 0.65 2.1
929,850 - 13121 mRNA_4753 0.65 2.5
929,884 + 13121 mRNA_4753 0.66 -0.4
930,106 - 13121 mRNA_4753 0.73 -0.0
930,118 - 13121 mRNA_4753 0.73 -2.0
930,118 + 13121 mRNA_4753 0.73 -0.6
930,303 + 13121 mRNA_4753 0.78 -0.1
930,308 - 13121 mRNA_4753 0.78 -2.3
930,429 - 13121 mRNA_4753 0.82 0.0
930,441 - 13121 mRNA_4753 0.82 -0.1
930,493 - 13121 mRNA_4753 0.84 0.7
930,568 - 13121 mRNA_4753 0.86 -0.4
930,593 + 13121 mRNA_4753 0.87 1.0
930,908 + 3.1
931,011 - 0.5
931,024 + 1.9
931,031 - 0.2
931,036 - 0.4
931,051 + -0.0
931,202 + -2.4
931,204 - 0.8
931,211 + 1.7
931,214 - -1.3
931,336 + 0.0
931,336 + -0.3
931,342 - 0.5
931,343 - -2.5
931,347 + -0.1
931,357 - 0.4
931,359 - 0.3
931,360 - 1.3
931,360 + 0.3
931,361 - -0.5
931,367 - 0.9
931,376 + 0.4
931,376 + 0.6
931,379 + -1.2
931,386 - 1.5
931,413 + 0.4
931,508 - -0.1
931,524 + -0.2
931,540 - 1.4
931,680 - -0.7
931,801 - 13122 mRNA_4754 0.12 -2.0
931,806 - 13122 mRNA_4754 0.12 0.1
931,813 + 13122 mRNA_4754 0.13 2.1
931,881 - 13122 mRNA_4754 0.17 -1.1
931,955 - 13122 mRNA_4754 0.21 0.2
931,989 + 13122 mRNA_4754 0.23 1.0
931,990 - 13122 mRNA_4754 0.23 -1.7
932,016 + 13122 mRNA_4754 0.25 3.9