Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4752

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4751: 13119 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 921381 to 922742 13119 mRNA_4752: 13120 - KOG1263 Multicopper oxidases, at 922993 to 927297 13120 mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927583 to 931061 13121

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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922,065 - 13119 mRNA_4751 0.50 -0.2
922,244 + 13119 mRNA_4751 0.63 0.2
922,295 - 13119 mRNA_4751 0.67 2.4
922,370 + 13119 mRNA_4751 0.73 0.6
922,541 + 13119 mRNA_4751 0.85 1.5
922,542 - 13119 mRNA_4751 0.85 1.0
922,551 - 13119 mRNA_4751 0.86 -0.9
922,585 + 13119 mRNA_4751 0.88 0.4
922,697 + 2.7
923,294 - -0.0
923,310 - 1.6
923,474 + 13120 mRNA_4752 0.11 1.0
923,596 - 13120 mRNA_4752 0.14 0.6
923,728 + 13120 mRNA_4752 0.17 0.9
923,743 + 13120 mRNA_4752 0.17 -0.1
923,754 + 13120 mRNA_4752 0.18 0.3
923,890 - 13120 mRNA_4752 0.21 1.1
923,946 + 13120 mRNA_4752 0.22 1.0
924,002 - 13120 mRNA_4752 0.23 0.0
924,005 - 13120 mRNA_4752 0.24 0.2
924,009 + 13120 mRNA_4752 0.24 -0.3
924,431 - 13120 mRNA_4752 0.33 0.3
924,623 + 13120 mRNA_4752 0.38 1.0
924,627 - 13120 mRNA_4752 0.38 0.4
925,597 - 13120 mRNA_4752 0.60 0.8
925,669 + 13120 mRNA_4752 0.62 2.4
926,157 + 13120 mRNA_4752 0.73 0.4
926,194 + 13120 mRNA_4752 0.74 1.5
926,311 - 13120 mRNA_4752 0.77 0.8
926,496 - 13120 mRNA_4752 0.81 1.6
926,672 - 13120 mRNA_4752 0.85 1.2
926,822 + 13120 mRNA_4752 0.89 0.7
926,841 + 13120 mRNA_4752 0.89 0.9
926,930 - 1.3
926,936 - 0.3
927,146 + -0.4
927,225 - -0.6
927,384 - -0.0
927,687 + -0.6
928,093 + 13121 mRNA_4753 0.15 1.6
928,145 - 13121 mRNA_4753 0.16 1.9
928,208 - 13121 mRNA_4753 0.18 0.8
928,215 + 13121 mRNA_4753 0.18 -2.5