Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4736

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4735: 13103 - K03654 recQ ATP-dependent DNA helicase RecQ, at 885330 to 888560 13103 mRNA_4736: 13104 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 888664 to 889665 13104 mRNA_4737: 13105 - K15272 SLC35A1_2_3 solute carrier family 35 (UDP-sugar transporter), member A1/2/3, at 889765 to 891262 13105

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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887,819 + 13103 mRNA_4735 0.77 0.6
887,840 - 13103 mRNA_4735 0.78 0.7
887,900 + 13103 mRNA_4735 0.80 -1.6
887,904 + 13103 mRNA_4735 0.80 0.6
887,945 + 13103 mRNA_4735 0.81 2.4
887,946 - 13103 mRNA_4735 0.81 0.8
888,080 - 13103 mRNA_4735 0.85 1.4
888,117 - 13103 mRNA_4735 0.86 2.9
888,121 + 13103 mRNA_4735 0.86 0.8
888,396 + 0.5
888,397 - -0.6
888,534 + 1.3
888,573 - 1.7
888,587 + 0.2
888,817 - 13104 mRNA_4736 0.15 1.6
889,039 + 13104 mRNA_4736 0.37 2.7
889,192 - 13104 mRNA_4736 0.53 0.1
889,282 - 13104 mRNA_4736 0.62 1.0
889,296 + 13104 mRNA_4736 0.63 0.5
889,297 - 13104 mRNA_4736 0.63 0.6
889,301 - 13104 mRNA_4736 0.64 1.8
889,319 + 13104 mRNA_4736 0.65 -0.8
889,440 + 13104 mRNA_4736 0.77 1.0
889,564 - 13104 mRNA_4736 0.90 0.2
889,586 - 0.3
889,602 - 2.3
889,696 + 0.9
889,703 + -0.1
889,723 + 1.2
889,731 + 0.1
889,738 + -0.4
889,747 + -2.6
889,750 - 0.5
889,751 + -0.2
889,828 + -1.1
889,892 - 0.7
889,920 + 13105 mRNA_4737 0.10 0.9
889,926 + 13105 mRNA_4737 0.11 3.0
889,929 - 13105 mRNA_4737 0.11 0.2
890,026 + 13105 mRNA_4737 0.17 0.3
890,056 + 13105 mRNA_4737 0.19 3.0
890,160 + 13105 mRNA_4737 0.26 0.3
890,323 - 13105 mRNA_4737 0.37 -2.7
890,357 - 13105 mRNA_4737 0.40 2.1
890,467 + 13105 mRNA_4737 0.47 -1.8
890,483 + 13105 mRNA_4737 0.48 -0.4
890,494 + 13105 mRNA_4737 0.49 0.7