Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4731

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874263 to 876540 13098 mRNA_4731: 13099 - K08770 UBC ubiquitin C, at 876740 to 878353 13099

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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875,928 + 13098 mRNA_4730 0.73 0.2
876,202 + 13098 mRNA_4730 0.85 -0.4
876,356 - 0.2
876,517 - 1.6
876,620 + -0.1
876,637 + -0.2
876,643 - 1.1
876,649 - -1.0
876,652 - 0.5
876,656 - 1.4
876,657 + -0.5
876,657 + 1.9
876,665 + 0.4
876,670 + 2.1
876,671 + -0.7
876,677 + -1.5
876,679 - 1.7
876,695 + 0.2
876,698 - 1.9
876,728 - 1.3
876,737 - -1.3
876,757 + 1.7
876,759 - 2.6
876,760 + -0.2
876,769 - -0.2
876,775 - 1.6
876,780 - -0.1
876,793 - 0.8
876,795 - 0.2
876,820 - 1.8
876,836 + -1.1
876,841 - 1.1
876,847 + 0.8
876,851 + 1.0
876,859 - 0.2
876,861 - 2.0
876,869 + 0.5
876,873 + 0.6
876,875 + 3.5
876,891 - -0.7
876,894 + 2.8
876,894 + 1.0
876,897 + -1.3
876,923 + 13099 mRNA_4731 0.11 -0.5
876,926 - 13099 mRNA_4731 0.12 1.6
876,976 - 13099 mRNA_4731 0.15 0.2
876,985 + 13099 mRNA_4731 0.15 0.0
877,032 - 13099 mRNA_4731 0.18 1.6
877,048 - 13099 mRNA_4731 0.19 0.8
877,063 - 13099 mRNA_4731 0.20 0.2
877,064 - 13099 mRNA_4731 0.20 -0.1
877,085 + 13099 mRNA_4731 0.21 0.4
877,091 + 13099 mRNA_4731 0.22 -2.6
877,227 + 13099 mRNA_4731 0.30 1.0
877,362 + 13099 mRNA_4731 0.39 0.7
877,510 - 13099 mRNA_4731 0.48 -0.4
877,525 + 13099 mRNA_4731 0.49 1.6
877,552 + 13099 mRNA_4731 0.50 0.7
877,661 + 13099 mRNA_4731 0.57 1.9
877,793 - 13099 mRNA_4731 0.65 0.5
877,801 + 13099 mRNA_4731 0.66 1.1
877,955 + 13099 mRNA_4731 0.75 -0.0
878,214 + 0.3
878,383 + 1.7
878,392 + 0.2
878,399 - -0.2
878,401 - -0.7
878,467 - 0.8
878,497 - 0.8
878,528 - 0.5
878,533 + -0.0
878,549 - -1.0
878,549 - 0.2
878,557 + -0.8
878,585 - 1.5
878,586 + 4.3
878,592 - 0.7
878,600 + 0.0
878,674 + 0.1
878,675 - 2.2
878,705 - 0.9
878,710 - -1.2
878,713 - -0.1
878,715 + -0.9
878,721 - 0.4
878,722 + 0.5
878,729 - 0.4
878,731 + -0.8
878,736 - 0.9
878,737 + -1.3
878,739 - 0.4
878,758 + 0.1
878,758 + 0.4
878,763 + -0.7
878,768 - 0.4
878,775 - 1.2
878,776 + 1.0
878,779 - -0.3
878,779 - 0.3
878,784 + -0.2
878,790 + -0.3
878,791 - -1.8
878,798 - 1.7
878,799 + -0.4
878,808 + 1.3
878,815 - 0.7
878,818 + 0.5
878,818 + -0.0
878,842 + -0.3
878,847 - 0.2
878,899 - 1.2
878,913 - 0.3
878,941 - 2.6
878,953 + -2.4
878,973 + 0.7
879,034 - -2.1
879,076 - 0.3
879,084 + -0.1
879,087 - -0.4
879,088 + 1.3
879,088 + 0.1
879,089 - 0.1
879,090 + -2.3
879,093 + 2.6
879,106 - 1.5
879,112 + 1.2
879,112 + -1.3
879,112 + -0.4
879,116 + 0.4
879,133 + -0.3
879,136 - -0.2
879,145 - -0.6
879,147 - 0.5
879,154 + 0.4
879,157 - -1.1
879,159 - 1.5
879,159 - 2.5
879,161 - 0.4
879,162 - 3.0
879,165 + 1.2
879,172 - 0.4
879,172 - -0.4
879,173 - 3.7
879,174 - 0.4
879,178 + 1.8
879,188 - 0.1
879,188 - 0.3
879,189 + 2.4
879,190 - 1.7
879,193 + 1.4
879,195 - 0.2
879,197 - 0.3
879,197 + 0.1
879,198 - 0.7
879,205 - 2.3
879,212 + 0.2
879,216 + 0.1
879,218 - -0.9
879,225 + 1.0
879,230 + -0.0
879,238 + 0.7
879,239 - 0.4
879,260 + 0.7
879,273 - 1.0
879,282 + 0.2
879,296 - -0.7
879,296 - 1.1
879,305 + 0.6
879,308 - 1.5
879,309 - -0.2
879,323 - -2.4
879,331 - 1.3
879,331 - 1.4