Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4719

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846943 to 849026 13086 mRNA_4719: 13087 - K18693 DPP1 diacylglycerol diphosphate phosphatase / phosphatidate phosphatase, at 849310 to 850936 13087 mRNA_4720: 13088 - K01415 ECE endothelin-converting enzyme, at 851220 to 854422 13088

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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848,387 + 13086 mRNA_4718 0.69 0.2
848,394 - 13086 mRNA_4718 0.70 2.0
848,397 - 13086 mRNA_4718 0.70 0.1
848,954 - -0.1
848,954 - 0.0
849,097 - 0.0
849,256 - -0.6
849,260 + 0.1
849,275 + -0.4
849,279 - 1.9
849,280 - 0.4
849,367 + -1.4
849,381 + 2.9
849,401 - -2.1
849,404 - -0.6
849,431 - 0.0
849,434 + -0.3
849,570 - 13087 mRNA_4719 0.16 0.8
849,598 + 13087 mRNA_4719 0.18 -0.8
849,621 + 13087 mRNA_4719 0.19 1.1
849,702 - 13087 mRNA_4719 0.24 0.6
849,743 - 13087 mRNA_4719 0.27 2.2
849,802 + 13087 mRNA_4719 0.30 1.8
849,822 - 13087 mRNA_4719 0.31 0.4
849,826 + 13087 mRNA_4719 0.32 -0.6
850,012 + 13087 mRNA_4719 0.43 0.7
850,128 - 13087 mRNA_4719 0.50 1.0
850,133 - 13087 mRNA_4719 0.51 1.3
850,418 + 13087 mRNA_4719 0.68 0.4
850,421 - 13087 mRNA_4719 0.68 -0.1
850,551 - 13087 mRNA_4719 0.76 -2.7
850,993 - 0.6
851,104 - 0.3
851,332 - 0.2
851,602 - 13088 mRNA_4720 0.12 0.7
851,665 - 13088 mRNA_4720 0.14 1.6