Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4718

Experiments: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4717: 13085 - BLAST putative proteasome regulatory subunit 12 [Rhizoctoni..., at 844086 to 846101 13085 mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846943 to 849026 13086 mRNA_4719: 13087 - K18693 DPP1 diacylglycerol diphosphate phosphatase / phosphatidate phosphatase, at 849310 to 850936 13087

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
846,034 + -1.2
846,037 - -1.3
846,048 + -0.4
846,250 - 0.8
846,365 - 0.4
846,479 - 1.3
846,495 + 1.2
846,513 + 3.4
846,598 - 0.8
846,617 + -1.3
846,627 - 0.0
846,630 - 1.4
846,645 + 0.6
846,649 + -1.6
846,660 + -0.9
846,782 - -1.1
846,785 - -0.2
846,794 - -1.6
846,812 - -1.1
846,919 - 0.3
847,070 - -0.1
847,094 - -0.1
847,485 + 13086 mRNA_4718 0.26 0.0
847,488 - 13086 mRNA_4718 0.26 0.3
847,497 + 13086 mRNA_4718 0.27 -0.0
847,916 - 13086 mRNA_4718 0.47 0.4
848,048 + 13086 mRNA_4718 0.53 0.5
848,155 - 13086 mRNA_4718 0.58 0.3
848,239 + 13086 mRNA_4718 0.62 -1.1
848,387 + 13086 mRNA_4718 0.69 0.2
848,394 - 13086 mRNA_4718 0.70 2.0
848,397 - 13086 mRNA_4718 0.70 0.1
848,954 - -0.1
848,954 - 0.0
849,097 - 0.0
849,256 - -0.6
849,260 + 0.1
849,275 + -0.4
849,279 - 1.9
849,280 - 0.4
849,367 + -1.4
849,381 + 2.9
849,401 - -2.1
849,404 - -0.6
849,431 - 0.0
849,434 + -0.3
849,570 - 13087 mRNA_4719 0.16 0.8
849,598 + 13087 mRNA_4719 0.18 -0.8
849,621 + 13087 mRNA_4719 0.19 1.1
849,702 - 13087 mRNA_4719 0.24 0.6
849,743 - 13087 mRNA_4719 0.27 2.2
849,802 + 13087 mRNA_4719 0.30 1.8
849,822 - 13087 mRNA_4719 0.31 0.4
849,826 + 13087 mRNA_4719 0.32 -0.6
850,012 + 13087 mRNA_4719 0.43 0.7