Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4714

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4713: 13081 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 834390 to 838234 13081 mRNA_4714: 13082 - K01183 E3.2.1.14 chitinase, at 838359 to 840435 13082 mRNA_4715: 13083 - KOG1730 Thioredoxin-like protein, at 840551 to 841550 13083

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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837,443 + 13081 mRNA_4713 0.79 -1.3
837,482 + 13081 mRNA_4713 0.80 1.0
837,544 + 13081 mRNA_4713 0.82 1.3
838,426 + 0.3
838,586 + 13082 mRNA_4714 0.11 0.5
838,619 + 13082 mRNA_4714 0.13 3.4
838,662 + 13082 mRNA_4714 0.15 2.1
839,432 + 13082 mRNA_4714 0.52 -0.2
839,580 + 13082 mRNA_4714 0.59 1.4
839,619 + 13082 mRNA_4714 0.61 -0.3
839,768 + 13082 mRNA_4714 0.68 1.0
839,872 - 13082 mRNA_4714 0.73 0.9
839,881 + 13082 mRNA_4714 0.73 -0.5
840,191 - 13082 mRNA_4714 0.88 0.2
840,481 - -0.6
840,511 - -0.3
840,650 + 0.8
840,780 + 13083 mRNA_4715 0.23 0.3
841,057 + 13083 mRNA_4715 0.51 -0.3
841,060 + 13083 mRNA_4715 0.51 2.5
841,237 + 13083 mRNA_4715 0.69 2.9
841,369 - 13083 mRNA_4715 0.82 0.1
841,376 + 13083 mRNA_4715 0.82 0.4