Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4700

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4699: 13067 - K09140 TSR3 pre-rRNA-processing protein TSR3, at 801271 to 802584 13067 mRNA_4700: 13068 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 802870 to 804709 13068 mRNA_4701: 13069 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 805189 to 806290 13069

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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801,871 + 13067 mRNA_4699 0.46 1.6
801,875 + 13067 mRNA_4699 0.46 -0.4
802,459 - 0.0
802,666 - -0.2
802,788 - 0.6
802,796 + 0.0
803,040 - -1.4
803,210 + 13068 mRNA_4700 0.18 -0.3
803,361 - 13068 mRNA_4700 0.27 0.2
803,368 - 13068 mRNA_4700 0.27 0.8
803,641 - 13068 mRNA_4700 0.42 -0.4
803,777 - 13068 mRNA_4700 0.49 0.6
804,357 - 13068 mRNA_4700 0.81 -0.2
804,361 + 13068 mRNA_4700 0.81 -0.9
804,381 - 13068 mRNA_4700 0.82 0.1
804,510 + 13068 mRNA_4700 0.89 -1.3
804,518 - 13068 mRNA_4700 0.90 -0.1
804,525 + 13068 mRNA_4700 0.90 -0.5
804,634 - -0.3
804,660 - 2.0
804,672 + -0.8
804,678 - 0.9
804,791 - -0.6
804,804 - 0.6
804,816 - 0.4
804,821 + -1.6
804,821 + 0.2
804,822 - 0.3
804,826 + 0.9
804,831 + -0.1
804,839 + 1.8
804,841 - 0.6
804,847 + 1.8
804,850 - 1.1
804,858 + -0.1
804,863 + 0.7
804,878 - 0.3
804,888 - -0.0
804,895 + 1.3
805,036 - 1.1
805,045 - 0.5
805,045 + -0.5
805,054 + 1.2
805,064 + -0.2
805,068 - 0.6
805,071 + -0.5
805,084 + 0.1
805,086 + -1.4
805,088 - -0.4
805,110 + -1.1
805,142 - 0.6
805,161 - 1.5
805,181 - -1.2
805,225 + -1.1
805,242 - -0.7
805,257 + -0.1
805,267 - 0.5
805,274 + -1.3
805,276 - 0.9
805,278 - 3.4
805,284 + 0.8
805,289 + -1.0
805,293 + 2.7
805,295 - 0.3
805,413 - 13069 mRNA_4701 0.20 0.8
805,440 - 13069 mRNA_4701 0.23 -0.1