Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4646

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4645: 13013 - Hypothetical Protein, at 680533 to 681409 13013 mRNA_4646: 13014 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 681473 to 684221 13014 mRNA_4647: 13015 - K03032 PSMD1, RPN2 26S proteasome regulatory subunit N2, at 684637 to 688290 13015

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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680,544 + -1.5
680,551 + -0.6
680,571 - 0.7
680,625 + 13013 mRNA_4645 0.10 -1.8
681,257 + 13013 mRNA_4645 0.83 -0.3
681,850 + 13014 mRNA_4646 0.14 -0.1
681,994 - 13014 mRNA_4646 0.19 -0.6
682,137 + 13014 mRNA_4646 0.24 1.5
682,163 - 13014 mRNA_4646 0.25 0.9
682,167 + 13014 mRNA_4646 0.25 1.3
682,291 - 13014 mRNA_4646 0.30 -0.8
682,398 - 13014 mRNA_4646 0.34 -1.1
682,809 + 13014 mRNA_4646 0.49 2.6
682,862 - 13014 mRNA_4646 0.51 1.1
683,082 + 13014 mRNA_4646 0.59 1.8
683,122 - 13014 mRNA_4646 0.60 0.9
683,148 + 13014 mRNA_4646 0.61 -0.1
683,166 + 13014 mRNA_4646 0.62 0.1
683,319 - 13014 mRNA_4646 0.67 0.3
683,719 + 13014 mRNA_4646 0.82 1.0
683,722 - 13014 mRNA_4646 0.82 1.1
683,728 + 13014 mRNA_4646 0.82 1.1
683,729 - 13014 mRNA_4646 0.82 -0.0
683,943 - 13014 mRNA_4646 0.90 -0.7
684,073 - 0.8
684,304 - -0.6
684,325 + 1.0
684,330 - 1.2
684,342 - 0.5
684,595 - 0.6
684,627 + 0.4