Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4640

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4639: 13007 - KOG3469 Cytochrome c oxidase, subunit VIa/COX13, at 665005 to 666466 13007 mRNA_4640: 13008 - KOG1399 Flavin-containing monooxygenase, at 666733 to 668799 13008 mRNA_4641: 13009 - KOG1161 Protein involved in vacuolar polyphosphate accumulation, contains SPX domain, at 669193 to 672697 13009

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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665,845 - 13007 mRNA_4639 0.57 -1.2
665,974 - 13007 mRNA_4639 0.66 1.4
665,997 - 13007 mRNA_4639 0.68 -0.8
666,126 + 13007 mRNA_4639 0.77 1.4
666,260 + 13007 mRNA_4639 0.86 -2.2
666,556 + -1.8
667,259 - 13008 mRNA_4640 0.25 2.1
667,377 - 13008 mRNA_4640 0.31 0.0
667,415 + 13008 mRNA_4640 0.33 0.6
667,416 + 13008 mRNA_4640 0.33 -0.4
667,433 - 13008 mRNA_4640 0.34 1.7
667,574 - 13008 mRNA_4640 0.41 0.8
667,657 - 13008 mRNA_4640 0.45 -0.2
667,687 - 13008 mRNA_4640 0.46 2.2
667,687 - 13008 mRNA_4640 0.46 -0.8
668,025 + 13008 mRNA_4640 0.63 0.9
668,137 - 13008 mRNA_4640 0.68 0.2
668,138 + 13008 mRNA_4640 0.68 0.8
668,314 + 13008 mRNA_4640 0.76 -0.3
668,398 - 13008 mRNA_4640 0.81 -0.0
668,592 + 13008 mRNA_4640 0.90 -0.8
668,746 - -0.5
668,747 - 0.5
668,878 + 0.2
668,898 - 1.0
669,789 + 13009 mRNA_4641 0.17 0.9