Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4627

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4626: 12994 - HMMPfam-Beta-lactamase-PF00144,SUPERFAMILY--SSF56601, at 630956 to 632424 12994 mRNA_4627: 12995 - K16196 EIF2AK4 eukaryotic translation initiation factor 2-alpha kinase 4, at 632706 to 638769 12995 mRNA_4628: 12996 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 639260 to 641629 12996

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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631,992 + 12994 mRNA_4626 0.71 -2.2
632,513 + -0.9
632,684 - 0.1
632,836 - -0.6
632,996 + -0.5
633,680 + 12995 mRNA_4627 0.16 2.6
633,681 + 12995 mRNA_4627 0.16 1.4
633,685 - 12995 mRNA_4627 0.16 -0.1
634,011 + 12995 mRNA_4627 0.22 -0.8
634,131 + 12995 mRNA_4627 0.23 2.0
634,247 - 12995 mRNA_4627 0.25 1.1
634,574 - 12995 mRNA_4627 0.31 1.8
634,710 - 12995 mRNA_4627 0.33 -0.6
635,189 + 12995 mRNA_4627 0.41 0.7
635,448 + 12995 mRNA_4627 0.45 2.2
635,593 - 12995 mRNA_4627 0.48 -0.0
636,689 + 12995 mRNA_4627 0.66 0.8
636,715 - 12995 mRNA_4627 0.66 0.0
636,934 - 12995 mRNA_4627 0.70 0.6
637,225 + 12995 mRNA_4627 0.75 0.4
637,243 - 12995 mRNA_4627 0.75 0.6
637,266 - 12995 mRNA_4627 0.75 0.0
637,681 + 12995 mRNA_4627 0.82 0.2
637,888 + 12995 mRNA_4627 0.85 1.9
637,955 - 12995 mRNA_4627 0.87 0.7
638,002 + 12995 mRNA_4627 0.87 0.8
638,056 - 12995 mRNA_4627 0.88 0.1
638,124 + 12995 mRNA_4627 0.89 -0.3
638,545 - -1.0
638,789 + 1.2
638,800 - -0.0
638,817 - 0.4
638,826 - -1.1
638,952 - -0.5
638,958 + -0.9
639,112 + 0.9
639,403 - 1.0
639,424 - 0.6
639,426 + 0.8
639,427 + 0.3
639,540 - 12996 mRNA_4628 0.12 2.6