Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4622

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4621: 12989 - KOG0141 Isovaleryl-CoA dehydrogenase, at 619140 to 621311 12989 mRNA_4622: 12990 - K20168 TBC1D15 TBC1 domain family member 15, at 621636 to 624863 12990 mRNA_4623: 12991 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 625237 to 628203 12991

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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621,290 + 0.3
621,563 - -0.8
621,564 + 1.6
621,578 + 1.7
621,602 + 0.6
621,877 + 1.7
621,884 - 3.5
621,897 - -0.2
621,898 - 0.2
621,902 - -0.7
621,907 + -0.5
622,444 - 12990 mRNA_4622 0.25 -1.4
622,601 - 12990 mRNA_4622 0.30 -0.8
623,060 - 12990 mRNA_4622 0.44 -0.3
623,761 + 12990 mRNA_4622 0.66 -0.3
625,028 + 0.7
625,155 - 0.8
625,579 + 12991 mRNA_4623 0.12 1.2
625,735 + 12991 mRNA_4623 0.17 -1.2