Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4621

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4620: 12988 - K05293 PIGU phosphatidylinositol glycan, class U, at 617665 to 619015 12988 mRNA_4621: 12989 - KOG0141 Isovaleryl-CoA dehydrogenase, at 619140 to 621311 12989 mRNA_4622: 12990 - K20168 TBC1D15 TBC1 domain family member 15, at 621636 to 624863 12990

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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619,035 - 0.5
619,036 - 1.4
619,053 - -0.3
619,068 - 0.7
619,072 + 0.0
619,078 + 0.9
619,209 - -0.1
619,230 + -0.6
619,785 + 12989 mRNA_4621 0.30 1.0
619,948 + 12989 mRNA_4621 0.37 0.0
620,230 - 12989 mRNA_4621 0.50 -0.1
620,382 + 12989 mRNA_4621 0.57 3.0
621,290 + 0.3
621,563 - -0.8
621,564 + 1.6
621,578 + 1.7
621,602 + 0.6
621,877 + 1.7
621,884 - 3.5
621,897 - -0.2
621,898 - 0.2
621,902 - -0.7
621,907 + -0.5