Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4611

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578505 to 580784 12978 mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581110 to 587880 12979

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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580,383 + 12978 mRNA_4610 0.82 0.7
580,939 + -0.5
581,229 - 4.0
581,556 + 1.4
581,813 - 12979 mRNA_4611 0.10 -0.2
582,440 + 12979 mRNA_4611 0.20 0.8
582,440 + 12979 mRNA_4611 0.20 0.4
583,201 - 12979 mRNA_4611 0.31 -0.2
583,212 - 12979 mRNA_4611 0.31 -0.9
583,743 + 12979 mRNA_4611 0.39 0.2
583,903 - 12979 mRNA_4611 0.41 0.6
583,937 + 12979 mRNA_4611 0.42 1.2
584,034 - 12979 mRNA_4611 0.43 -1.5
584,982 + 12979 mRNA_4611 0.57 0.8
585,009 + 12979 mRNA_4611 0.58 0.4
585,175 + 12979 mRNA_4611 0.60 -0.0
585,542 - 12979 mRNA_4611 0.65 -1.2
585,561 + 12979 mRNA_4611 0.66 -2.4
585,627 - 12979 mRNA_4611 0.67 1.4
586,045 - 12979 mRNA_4611 0.73 1.2
586,051 + 12979 mRNA_4611 0.73 2.3
586,166 - 12979 mRNA_4611 0.75 -0.1
586,626 - 12979 mRNA_4611 0.81 0.2
586,709 + 12979 mRNA_4611 0.83 -1.4
586,743 - 12979 mRNA_4611 0.83 1.5
587,186 - 12979 mRNA_4611 0.90 -0.9
587,331 + -0.2
587,640 - -0.6
587,930 - 0.4
588,066 - 1.8
588,070 - 1.9
588,076 - 2.4
588,098 - 0.5
588,174 - -1.4
588,176 + -0.6
588,195 - 0.3
588,250 - 1.6
588,258 - 0.0
588,259 - -3.5
588,285 + -1.8
588,311 + 0.6
588,318 + 0.1
588,320 - 4.0
588,330 - 4.1
588,330 + -0.1
588,347 - -1.8
588,366 - -0.5
588,384 + -0.3
588,385 - 0.4
588,389 + 2.5
588,392 - 3.4
588,402 + -0.7
588,408 + 0.2
588,416 - 0.4
588,421 + -1.8
588,424 - 0.3
588,487 + 1.6
588,538 - 1.6
588,540 - 0.4
588,543 + 0.5
588,545 + -0.5
588,546 + 0.0
588,607 - 2.0
588,609 - 0.4
588,610 + 0.1
588,708 - 0.5
588,712 - -0.9
588,715 + 0.2
588,717 + 0.8
588,767 - 0.2
588,779 - -0.2
588,839 - 0.7
588,857 - -0.7
588,865 + -2.8