Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4590

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4589: 12957 - K14795 RRP36 ribosomal RNA-processing protein 36, at 535476 to 536079 12957 mRNA_4590: 12958 - Hypothetical Protein, at 537053 to 538336 12958 mRNA_4591: 12959 - KOG0379 Kelch repeat-containing proteins, at 538604 to 541004 12959

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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536,759 - 0.3
536,761 - -0.5
536,777 + 0.6
536,786 + 0.7
536,921 - 2.6
536,938 + -0.1
536,951 + -0.5
537,045 + 0.5
537,080 + 0.4
537,789 - 12958 mRNA_4590 0.57 -0.5
537,804 - 12958 mRNA_4590 0.58 0.9
537,809 + 12958 mRNA_4590 0.59 -1.2
537,817 + 12958 mRNA_4590 0.60 0.9
537,933 - 12958 mRNA_4590 0.69 -2.0
538,220 - 0.4
538,531 + 1.2
538,661 + -0.0
538,666 + 0.2
538,682 - 0.3
538,821 + -0.3
539,127 + 12959 mRNA_4591 0.22 -0.6