Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4582

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4581: 12949 - K17964 LRPPRC leucine-rich PPR motif-containing protein, mitochondrial, at 513749 to 516613 12949 mRNA_4582: 12950 - KOG2450 Aldehyde dehydrogenase, at 517111 to 519102 12950 mRNA_4583: 12951 - Hypothetical Protein, at 519562 to 522262 12951

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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516,669 + -0.0
516,744 + 1.0
516,760 + -0.2
516,879 + 1.1
516,896 + 1.0
516,897 + 0.4
516,902 + 0.4
516,984 - 1.1
516,988 - -0.7
516,990 + -0.3
517,023 + 0.6
517,029 + 0.5
517,045 - 0.9
517,061 + 0.5
517,067 + -0.1
517,210 + 0.6
517,328 - 12950 mRNA_4582 0.11 1.3
517,339 - 12950 mRNA_4582 0.11 1.3
517,364 - 12950 mRNA_4582 0.13 1.3
517,479 - 12950 mRNA_4582 0.18 -0.8
517,485 - 12950 mRNA_4582 0.19 1.2
517,654 - 12950 mRNA_4582 0.27 0.6
517,793 + 12950 mRNA_4582 0.34 -0.8
517,967 - 12950 mRNA_4582 0.43 2.8
518,066 + 12950 mRNA_4582 0.48 0.2
518,350 - 12950 mRNA_4582 0.62 -0.1
518,789 + 12950 mRNA_4582 0.84 -0.1
518,897 - 12950 mRNA_4582 0.90 0.7
519,103 + 2.0
519,106 - 0.2
519,287 + 2.3
519,348 - 1.4
519,374 + 0.0
519,378 - 0.3
519,401 + -0.2
519,406 - -0.2
519,409 - 1.3
519,831 + 1.9
519,831 + 1.5
519,845 - 12951 mRNA_4583 0.10 0.9
519,965 - 12951 mRNA_4583 0.15 -4.0
519,971 + 12951 mRNA_4583 0.15 -0.0