Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4575

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4574: 12942 - K12184 VPS28 ESCRT-I complex subunit VPS28, at 499044 to 500144 12942 mRNA_4575: 12943 - HMMPfam-ICE2-PF08426, at 500416 to 502164 12943 mRNA_4576: 12944 - K00787 FDPS farnesyl diphosphate synthase, at 502452 to 503977 12944

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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499,794 - 12942 mRNA_4574 0.68 1.7
499,815 - 12942 mRNA_4574 0.70 0.4
500,103 - 0.4
500,248 - 0.8
500,397 - -1.2
500,400 + -0.0
500,402 + 0.8
500,455 + 1.4
500,541 + 2.1
500,695 - 12943 mRNA_4575 0.16 0.3
500,866 + 12943 mRNA_4575 0.26 -0.2
501,991 - -0.1
502,143 + -0.9
502,149 + -0.6
502,288 - 0.4
502,297 - -1.2
502,310 + 1.9