Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4568

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4567: 12935 - K10743 RNASEH2A ribonuclease H2 subunit A, at 484052 to 485585 12935 mRNA_4568: 12936 - Hypothetical Protein, at 485805 to 489325 12936 mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489481 to 490955 12937

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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485,134 - 12935 mRNA_4567 0.71 2.8
485,251 - 12935 mRNA_4567 0.78 0.2
485,252 + 12935 mRNA_4567 0.78 0.0
485,885 + 1.5
486,172 + 12936 mRNA_4568 0.10 -0.1
486,349 - 12936 mRNA_4568 0.15 1.8
486,444 + 12936 mRNA_4568 0.18 0.4
486,744 - 12936 mRNA_4568 0.27 0.1
486,861 + 12936 mRNA_4568 0.30 0.9
488,063 + 12936 mRNA_4568 0.64 0.1
488,168 + 12936 mRNA_4568 0.67 0.8
488,271 - 12936 mRNA_4568 0.70 0.4
488,351 - 12936 mRNA_4568 0.72 -1.0
488,352 + 12936 mRNA_4568 0.72 -0.1
488,357 + 12936 mRNA_4568 0.72 -2.7
488,371 - 12936 mRNA_4568 0.73 0.1
488,525 + 12936 mRNA_4568 0.77 1.4
488,662 + 12936 mRNA_4568 0.81 0.1
488,954 - 12936 mRNA_4568 0.89 0.6
489,115 + 0.9
489,246 - 0.3
489,812 + 12937 mRNA_4569 0.22 0.5