Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4566

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4565: 12933 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 477682 to 479259 12933 mRNA_4566: 12934 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 479407 to 483783 12934 mRNA_4567: 12935 - K10743 RNASEH2A ribonuclease H2 subunit A, at 484052 to 485585 12935

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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478,480 - 12933 mRNA_4565 0.51 -0.1
478,528 - 12933 mRNA_4565 0.54 2.1
478,650 + 12933 mRNA_4565 0.61 0.2
478,783 + 12933 mRNA_4565 0.70 0.7
479,111 - -0.6
479,251 - 1.2
479,394 - 1.1
479,984 - 12934 mRNA_4566 0.13 0.1
480,323 + 12934 mRNA_4566 0.21 -0.1
480,364 - 12934 mRNA_4566 0.22 2.6
481,063 + 12934 mRNA_4566 0.38 -0.1
481,899 + 12934 mRNA_4566 0.57 -0.1
482,215 - 12934 mRNA_4566 0.64 1.7
482,409 - 12934 mRNA_4566 0.69 0.1
482,419 + 12934 mRNA_4566 0.69 -0.5
482,521 - 12934 mRNA_4566 0.71 0.5
483,245 + 12934 mRNA_4566 0.88 -0.7
483,686 + -0.6
483,830 + -0.0
483,830 - -0.3
483,848 - 0.2
483,922 - 1.5
483,938 - -1.2
483,988 - 1.1
484,000 - -0.1
484,002 + 2.4
484,018 + 0.1
484,697 + 12935 mRNA_4567 0.42 -0.0